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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g528400v5   uncharacterized protein 
 ath-u.5   AT2G47090   zinc ion binding/nucleic acid binding protein 
 ath-u.5   AT3G62240   RING/U-box superfamily protein 
 gma-u.5   100799878   E3 ubiquitin-protein ligase ZNF598 
 gma-u.5   100780426   E3 ubiquitin-protein ligase ZNF598 
 sly-u.5   101255131   uncharacterized LOC101255131 
 osa-u.5   4327105   E3 ubiquitin-protein ligase hel2 
 osa-u.5   4338285   E3 ubiquitin-protein ligase hel2 
 zma-u.5   103639484   E3 ubiquitin-protein ligase hel2 
 zma-u.5   103639485   E3 ubiquitin-protein ligase hel2 
 zma-u.5   100383358   putative RING zinc finger domain superfamily protein 
 bra-r.6   103866405   E3 ubiquitin-protein ligase hel2 
 bra-r.6   103830350   E3 ubiquitin-protein ligase ZNF598 
 vvi-u.5   100262296   uncharacterized LOC100262296 
 ppo-u.5   7465219   E3 ubiquitin-protein ligase HEL2 
 ppo-u.5   7481432   uncharacterized LOC7481432 
 ppo-u.5   7455399   uncharacterized LOC7455399 
 mtr-u.5   11430027   uncharacterized LOC11430027 
 tae-r.2   123060879   E3 ubiquitin-protein ligase ZNF598 
 tae-r.2   123069538   E3 ubiquitin-protein ligase hel2 
 tae-r.2   123078024   E3 ubiquitin-protein ligase ZNF598 
 hvu-r.1   123443368   E3 ubiquitin-protein ligase ZNF598-like 
 hvu-r.1   123428512   E3 ubiquitin-protein ligase ZNF598-like 
 ghi-r.1   107886484   E3 ubiquitin-protein ligase ZNF598 
 ghi-r.1   107912290   E3 ubiquitin-protein ligase hel2 
 bna-r.1   106353311   E3 ubiquitin-protein ligase ZNF598 
 bna-r.1   106391905   E3 ubiquitin-protein ligase hel2 
 bna-r.1   106436384   E3 ubiquitin-protein ligase hel2-like 
 sbi-r.1   8081900   E3 ubiquitin-protein ligase ZNF598 
 sot-r.1   102586461   zinc finger protein 598-like 
 cit-r.1   102621840   E3 ubiquitin-protein ligase HEL2 
 bdi-r.1   100834912   E3 ubiquitin-protein ligase hel2 
 bdi-r.1   100832124   E3 ubiquitin-protein ligase hel2 
 nta-r.1   107762200   uncharacterized LOC107762200 
 nta-r.1   107789211   uncharacterized LOC107789211 

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Top 50 coexpressed genes to CHLRE_12g528400v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g528400v5 (cre-r.1 coexpression data)

CoexMap"5722445"


creCHLRE_12g528400v5 | Entrez gene ID : 5722445      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 2 2 1 2 3 2 1 3 1 3 2 2 3 1 1 1 2 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0072344 [list] [network] rescue of stalled ribosome  (6 genes)  IEA  
GO:0016567 [list] [network] protein ubiquitination  (136 genes)  IEA  
GO CC
GO MF
GO:0043022 [list] [network] ribosome binding  (39 genes)  IEA  
GO:0061630 [list] [network] ubiquitin protein ligase activity  (65 genes)  IEA  
Protein XP_001696976.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 3,  E.R. 3,  mito 1,  extr 1,  cyto_E.R. 1  (predict for XP_001696976.1)
Subcellular
localization
TargetP
other 5,  mito 5  (predict for XP_001696976.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g528400v5
ath-u.5
for
AT2G47090
ath-u.5
for
AT3G62240
gma-u.5
for
100799878
gma-u.5
for
100780426
sly-u.5
for
101255131
osa-u.5
for
4327105
osa-u.5
for
4338285
zma-u.5
for
103639484
zma-u.5
for
103639485
zma-u.5
for
100383358
bra-r.6
for
103866405
bra-r.6
for
103830350
vvi-u.5
for
100262296
ppo-u.5
for
7465219
ppo-u.5
for
7481432
ppo-u.5
for
7455399
mtr-u.5
for
11430027
tae-r.2
for
123060879
tae-r.2
for
123069538
tae-r.2
for
123078024
hvu-r.1
for
123443368
hvu-r.1
for
123428512
ghi-r.1
for
107886484
ghi-r.1
for
107912290
bna-r.1
for
106353311
bna-r.1
for
106391905
bna-r.1
for
106436384
sbi-r.1
for
8081900
sot-r.1
for
102586461
cit-r.1
for
102621840
bdi-r.1
for
100834912
bdi-r.1
for
100832124
nta-r.1
for
107762200
nta-r.1
for
107789211


Ortholog ID: 3676
Species cre ath ath gma gma sly osa osa zma zma zma bra bra vvi ppo ppo ppo mtr tae tae tae hvu hvu ghi ghi bna bna bna sbi sot cit bdi bdi nta nta
Symbol CHLRE_12g528400v5 AT2G47090 AT3G62240 LOC100799878 LOC100780426 LOC101255131 LOC4327105 LOC4338285 LOC103639484 LOC100383358 LOC100383253 LOC103866405 LOC103830350 LOC100262296 LOC7465219 LOC7481432 LOC7455399 LOC11430027 LOC123069538 LOC123122502 LOC123112986 LOC123443368 LOC123428512 LOC107912290 LOC107922705 LOC106353311 LOC106391905 LOC106436384 LOC8081900 LOC102586461 LOC102621840 LOC100834912 LOC100832124 LOC107762200 LOC107789211
Function* uncharacterized protein zinc ion binding/nucleic acid binding protein RING/U-box superfamily protein E3 ubiquitin-protein ligase ZNF598 E3 ubiquitin-protein ligase ZNF598 uncharacterized LOC101255131 E3 ubiquitin-protein ligase hel2 E3 ubiquitin-protein ligase hel2 E3 ubiquitin-protein ligase hel2 putative RING zinc finger domain superfamily protein uncharacterized LOC100383253 E3 ubiquitin-protein ligase hel2 E3 ubiquitin-protein ligase ZNF598 uncharacterized LOC100262296 E3 ubiquitin-protein ligase HEL2 uncharacterized LOC7481432 uncharacterized LOC7455399 uncharacterized LOC11430027 E3 ubiquitin-protein ligase hel2 E3 ubiquitin-protein ligase ZNF598 uncharacterized LOC123112986 E3 ubiquitin-protein ligase ZNF598-like E3 ubiquitin-protein ligase ZNF598-like E3 ubiquitin-protein ligase hel2 E3 ubiquitin-protein ligase ZNF598 E3 ubiquitin-protein ligase ZNF598 E3 ubiquitin-protein ligase hel2 E3 ubiquitin-protein ligase hel2-like E3 ubiquitin-protein ligase ZNF598 zinc finger protein 598-like E3 ubiquitin-protein ligase HEL2 E3 ubiquitin-protein ligase hel2 E3 ubiquitin-protein ligase hel2 uncharacterized LOC107762200 uncharacterized LOC107789211
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01230 Biosynthesis of amino acids 3
cre03040 Spliceosome 2
cre00260 Glycine, serine and threonine metabolism 2
cre01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00280 Valine, leucine and isoleucine degradation 2
bra00410 beta-Alanine metabolism 2
bra00640 Propanoate metabolism 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
hvu04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 3
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 4
ghi04626 Plant-pathogen interaction 4
ghi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 4
ghi03015 mRNA surveillance pathway 4
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03083 Polycomb repressive complex 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
bna03013 Nucleocytoplasmic transport 3
bna03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 2
bna03420 Nucleotide excision repair 2
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 8
bna00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
sot03015 mRNA surveillance pathway 2
sot03022 Basal transcription factors 2
sot03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 7
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5722445 819322 825397 100799878 100780426 101255131 4327105 4338285 103639484 100383358 100383253 103866405 103830350 100262296 7465219 7481432 7455399 11430027 123069538 123122502 123112986 123443368 123428512 107912290 107922705 106353311 106391905 106436384 8081900 102586461 102621840 100834912 100832124 107762200 107789211
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