ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cre-r.1	CHLRE_12g524700v5	uncharacterized protein
ath-u.5	AT5G59480	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
ath-u.5	AT5G59490	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
ath-u.5	AT5G02230	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
gma-u.5	121174947	uncharacterized LOC121174947
gma-u.5	100790020	uncharacterized LOC100790020
gma-u.5	100786323	uncharacterized protein C24B11.05
sly-u.5	101246255	uncharacterized protein C24B11.05
sly-u.5	101251614	haloacid dehalogenase-like hydrolase superfamily protein
sly-u.5	101251913	suppressor of disruption of TFIIS
osa-u.5	4326398	uncharacterized protein C24B11.05
osa-u.5	4332401	uncharacterized protein C24B11.05
osa-u.5	9266306	uncharacterized protein C24B11.05
zma-u.5	100283697	uncharacterized LOC100283697
zma-u.5	100284091	uncharacterized LOC100284091
zma-u.5	100273259	uncharacterized LOC100273259
bra-r.6	103845372	uncharacterized protein C24B11.05
bra-r.6	103842031	uncharacterized protein C24B11.05
bra-r.6	103867663	uncharacterized protein C24B11.05
vvi-u.5	100257326	uncharacterized protein C24B11.05
vvi-u.5	100245055	uncharacterized protein C24B11.05
vvi-u.5	GRIP21	ripening-related protein-like
ppo-u.5	7454933	uncharacterized LOC7454933
ppo-u.5	7474215	uncharacterized protein C24B11.05
mtr-u.5	11414016	uncharacterized protein C24B11.05
mtr-u.5	25498498	uncharacterized LOC25498498
mtr-u.5	11422877	suppressor of disruption of TFIIS
tae-r.2	123051952	suppressor of disruption of TFIIS
tae-r.2	123085441	phosphate metabolism protein 8
tae-r.2	123044079	suppressor of disruption of TFIIS
hvu-r.1	123447319	suppressor of disruption of TFIIS-like
hvu-r.1	123425148	uncharacterized LOC123425148
hvu-r.1	123399384	uncharacterized LOC123399384
ghi-r.1	107885981	uncharacterized protein C24B11.05
ghi-r.1	107898835	uncharacterized LOC107898835
ghi-r.1	107932460	uncharacterized protein C24B11.05
bna-r.1	106436128	uncharacterized protein C24B11.05
bna-r.1	106420398	uncharacterized protein C24B11.05-like
bna-r.1	106417842	suppressor of disruption of TFIIS
sbi-r.1	8063526	uncharacterized protein C24B11.05
sbi-r.1	8078057	uncharacterized protein C24B11.05
sbi-r.1	110431237	suppressor of disruption of TFIIS-like
sot-r.1	102604280	uncharacterized protein C24B11.05
sot-r.1	102599715	uncharacterized protein C24B11.05-like
sot-r.1	102599760	suppressor of disruption of TFIIS
cit-r.1	102624821	hypothetical protein
cit-r.1	112499289	uncharacterized LOC112499289
cit-r.1	102610855	hypothetical protein
bdi-r.1	100827747	uncharacterized protein C24B11.05
bdi-r.1	100834392	suppressor of disruption of TFIIS
bdi-r.1	100839359	suppressor of disruption of TFIIS
nta-r.1	107793790	uncharacterized protein C24B11.05
nta-r.1	107806273	uncharacterized protein C24B11.05
nta-r.1	107808571	uncharacterized protein C24B11.05

Top 50 coexpressed genes to CHLRE_12g524700v5 (cre-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CHLRE_12g524700v5 (cre-r.1 coexpression data)

CoexMap"5722514"

[Cytoscape]

Annotation

functional annotation

KEGG

cre00760 [list] [network] Nicotinate and nicotinamide metabolism (18 genes)

GO BP

GO CC

GO MF

Protein

XP_001697012.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 6, chlo 2, nucl 1, mito 1, pero 1

(predict for XP_001697012.1)

Subcellular
localization
TargetP

other 8

(predict for XP_001697012.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_12g524700v5	ath-u.5 for AT5G59480	ath-u.5 for AT5G59490	ath-u.5 for AT5G02230	gma-u.5 for 121174947	gma-u.5 for 100790020	gma-u.5 for 100786323	sly-u.5 for 101246255	sly-u.5 for 101251614	sly-u.5 for 101251913	osa-u.5 for 4326398	osa-u.5 for 4332401	osa-u.5 for 9266306	zma-u.5 for 100283697	zma-u.5 for 100284091	zma-u.5 for 100273259	bra-r.6 for 103845372	bra-r.6 for 103842031	bra-r.6 for 103867663	vvi-u.5 for 100257326	vvi-u.5 for 100245055	vvi-u.5 for GRIP21	ppo-u.5 for 7454933	ppo-u.5 for 7474215	mtr-u.5 for 11414016	mtr-u.5 for 25498498	mtr-u.5 for 11422877	tae-r.2 for 123051952	tae-r.2 for 123085441	tae-r.2 for 123044079	hvu-r.1 for 123447319	hvu-r.1 for 123425148	hvu-r.1 for 123399384	ghi-r.1 for 107885981	ghi-r.1 for 107898835	ghi-r.1 for 107932460	bna-r.1 for 106436128	bna-r.1 for 106420398	bna-r.1 for 106417842	sbi-r.1 for 8063526	sbi-r.1 for 8078057	sbi-r.1 for 110431237	sot-r.1 for 102604280	sot-r.1 for 102599715	sot-r.1 for 102599760	cit-r.1 for 102624821	cit-r.1 for 112499289	cit-r.1 for 102610855	bdi-r.1 for 100827747	bdi-r.1 for 100834392	bdi-r.1 for 100839359	nta-r.1 for 107793790	nta-r.1 for 107806273	nta-r.1 for 107808571

Ortholog

Ortholog ID: 430

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

Function^*

uncharacterized protein

Haloacid dehalogenase-like hydrolase (HAD) superfamily protein

uncharacterized LOC100790020

uncharacterized LOC100819459

uncharacterized protein C24B11.05

haloacid dehalogenase-like hydrolase superfamily protein

suppressor of disruption of TFIIS

uncharacterized protein C24B11.05

uncharacterized LOC100283697

uncharacterized LOC100284091

uncharacterized LOC100273259

uncharacterized protein C24B11.05

uncharacterized LOC100263185

uncharacterized protein C24B11.05

suppressor of disruption of TFIIS

uncharacterized protein C24B11.05

uncharacterized LOC25498498

suppressor of disruption of TFIIS

phosphate metabolism protein 8

suppressor of disruption of TFIIS-like

uncharacterized protein C24B11.05-like

suppressor of disruption of TFIIS-like

uncharacterized protein C24B11.05

suppressor of disruption of TFIIS

uncharacterized protein C24B11.05

suppressor of disruption of TFIIS-like

uncharacterized LOC8079688

uncharacterized protein C24B11.05-like

suppressor of disruption of TFIIS

hypothetical protein

uncharacterized LOC112499289

phosphate metabolism protein 8

suppressor of disruption of TFIIS

uncharacterized LOC100821281

uncharacterized protein C24B11.05

suppressor of disruption of TFIIS

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00280	Valine, leucine and isoleucine degradation	5
ath01210	2-Oxocarboxylic acid metabolism	3
ath04075	Plant hormone signal transduction	3
ath00640	Propanoate metabolism	2
ath00785	Lipoic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma02010	ABC transporters	4
gma00073	Cutin, suberine and wax biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00760	Nicotinate and nicotinamide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00020	Citrate cycle (TCA cycle)	3
sly01200	Carbon metabolism	3
sly00190	Oxidative phosphorylation	2
sly00640	Propanoate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00500	Starch and sucrose metabolism	3
osa00280	Valine, leucine and isoleucine degradation	3
osa00640	Propanoate metabolism	2
osa00785	Lipoic acid metabolism	2
osa01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00330	Arginine and proline metabolism	3
bra04075	Plant hormone signal transduction	2
bra00280	Valine, leucine and isoleucine degradation	2
bra00310	Lysine degradation	2
bra01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00053	Ascorbate and aldarate metabolism	2
bra00280	Valine, leucine and isoleucine degradation	2
bra00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01200	Carbon metabolism	7
bra00630	Glyoxylate and dicarboxylate metabolism	6
bra00380	Tryptophan metabolism	3
bra04016	MAPK signaling pathway - plant	3
bra04146	Peroxisome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00909	Sesquiterpenoid and triterpenoid biosynthesis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00900	Terpenoid backbone biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00900	Terpenoid backbone biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00030	Pentose phosphate pathway	4
tae00480	Glutathione metabolism	4
tae01200	Carbon metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01240	Biosynthesis of cofactors	4
hvu00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
hvu00940	Phenylpropanoid biosynthesis	2
hvu00941	Flavonoid biosynthesis	2
hvu00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04148	Efferocytosis	2
ghi00270	Cysteine and methionine metabolism	2
ghi00330	Arginine and proline metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00380	Tryptophan metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00564	Glycerophospholipid metabolism	3
sbi00740	Riboflavin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	3
cit03040	Spliceosome	2
cit04144	Endocytosis	2
cit04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04082	Neuroactive ligand signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00040	Pentose and glucuronate interconversions	3
bdi01240	Biosynthesis of cofactors	3
bdi00010	Glycolysis / Gluconeogenesis	2
bdi00053	Ascorbate and aldarate metabolism	2
bdi00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00190	Oxidative phosphorylation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00760	Nicotinate and nicotinamide metabolism	2
nta01240	Biosynthesis of cofactors	2
nta00900	Terpenoid backbone biosynthesis	2
nta04144	Endocytosis	2
nta04517	IgSF CAM signaling	2

Expression

Expression pattern

Entrez Gene ID^*

5722514

831784

825377

817774

100790020

100819459

100775435

101246255

101251614

101251913

4332401

9266306

4333827

100283697

100284091

100273259

103867663

103867173

103847468

100257326

100245055

100263185

7474215

7478826

7465100

11414016

25498498

25491589

123081002

123097912

123447319

123441171

123447322

107932460

107940890

107950139

106436128

106394733

106387058

8063526

110431237

8079688

102599715

102599760

102624821

112499289

102622497

100834392

100821281

107806273

107808571

107792716

The preparation time of this page was 0.5 [sec].


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	3	3	3	3	3	3	3	2	3	3	3	3	3	3	3	3	3	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_12g524700v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_12g524700v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**