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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g522350v5   aminoacyl-tRNA ligase 
 ath-u.5   AT3G04600   Nucleotidylyl transferase superfamily protein 
 gma-u.5   100798713   tryptophan--tRNA ligase, cytoplasmic 
 gma-u.5   100787194   tryptophan--tRNA ligase, cytoplasmic 
 sly-u.5   101246271   tryptophan--tRNA ligase, cytoplasmic 
 osa-u.5   4352435   tryptophan--tRNA ligase, cytoplasmic 
 zma-u.5   100282419   uncharacterized LOC100282419 
 bra-r.6   103859044   tryptophan--tRNA ligase, cytoplasmic 
 vvi-u.5   100257528   tryptophan--tRNA ligase, cytoplasmic 
 ppo-u.5   7478581   tryptophan--tRNA ligase, cytoplasmic 
 mtr-u.5   25500099   tryptophan--tRNA ligase, cytoplasmic 
 tae-r.2   123119808   tryptophan--tRNA ligase, cytoplasmic 
 tae-r.2   123110812   tryptophan--tRNA ligase, cytoplasmic 
 tae-r.2   123102628   tryptophan--tRNA ligase, cytoplasmic 
 hvu-r.1   123396106   tryptophan--tRNA ligase, cytoplasmic 
 hvu-r.1   123444651   tryptophan--tRNA ligase, cytoplasmic-like 
 ghi-r.1   121206146   tryptophan--tRNA ligase, cytoplasmic 
 ghi-r.1   107891513   tryptophan--tRNA ligase, cytoplasmic 
 bna-r.1   106365663   tryptophan--tRNA ligase, cytoplasmic-like 
 bna-r.1   106438983   tryptophan--tRNA ligase, cytoplasmic 
 sbi-r.1   8066308   tryptophan--tRNA ligase, cytoplasmic 
 sot-r.1   102589250   tryptophan--tRNA ligase, cytoplasmic 
 cit-r.1   102624769   tryptophan--tRNA ligase, cytoplasmic 
 bdi-r.1   100838621   tryptophan--tRNA ligase, cytoplasmic 
 nta-r.1   107769302   tryptophan--tRNA ligase, cytoplasmic 
 nta-r.1   107832588   tryptophan--tRNA ligase, cytoplasmic 
 nta-r.1   107797175   tryptophan--tRNA ligase, cytoplasmic-like 

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Top 50 coexpressed genes to CHLRE_12g522350v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g522350v5 (cre-r.1 coexpression data)

CoexMap"5722559"


creCHLRE_12g522350v5 | Entrez gene ID : 5722559      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 2 1 1 1 1 1 1 1 3 2 2 2 1 1 1 1 3
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre00970 [list] [network] Aminoacyl-tRNA biosynthesis (65 genes)
GO BP
GO:0006436 [list] [network] tryptophanyl-tRNA aminoacylation  (2 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (2907 genes)  IEA  
GO MF
GO:0004830 [list] [network] tryptophan-tRNA ligase activity  (2 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1223 genes)  IEA  
Protein XP_001697043.1 [sequence] [blastp]
Subcellular
localization
wolf
cysk 6,  cyto 4  (predict for XP_001697043.1)
Subcellular
localization
TargetP
other 8  (predict for XP_001697043.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g522350v5
ath-u.5
for
AT3G04600
gma-u.5
for
100798713
gma-u.5
for
100787194
sly-u.5
for
101246271
osa-u.5
for
4352435
zma-u.5
for
100282419
bra-r.6
for
103859044
vvi-u.5
for
100257528
ppo-u.5
for
7478581
mtr-u.5
for
25500099
tae-r.2
for
123119808
tae-r.2
for
123110812
tae-r.2
for
123102628
hvu-r.1
for
123396106
hvu-r.1
for
123444651
ghi-r.1
for
121206146
ghi-r.1
for
107891513
bna-r.1
for
106365663
bna-r.1
for
106438983
sbi-r.1
for
8066308
sot-r.1
for
102589250
cit-r.1
for
102624769
bdi-r.1
for
100838621
nta-r.1
for
107769302
nta-r.1
for
107832588
nta-r.1
for
107797175


Ortholog ID: 5497
Species cre ath gma gma sly osa zma bra vvi ppo mtr tae tae tae hvu hvu ghi ghi bna bna sbi sot cit bdi nta nta nta
Symbol CHLRE_12g522350v5 AT3G04600 LOC100798713 LOC100787194 LOC101246271 LOC4352435 LOC100282419 LOC103859044 LOC100257528 LOC7478581 LOC25500099 LOC123110812 LOC123159854 LOC123169058 LOC123396106 LOC123444651 LOC121206146 LOC107891513 LOC106438983 LOC106447633 LOC8066308 LOC102589250 LOC102624769 LOC100838621 LOC107769302 LOC107832588 LOC107797175
Function* aminoacyl-tRNA ligase Nucleotidylyl transferase superfamily protein tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic uncharacterized LOC100282419 tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic-like tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic tryptophan--tRNA ligase, cytoplasmic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01230 Biosynthesis of amino acids 8
cre00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
cre00970 Aminoacyl-tRNA biosynthesis 2
cre00290 Valine, leucine and isoleucine biosynthesis 2
cre01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
ath00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 3
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 5
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 10
zma03015 mRNA surveillance pathway 3
zma03018 RNA degradation 2
zma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 8
bra00020 Citrate cycle (TCA cycle) 6
bra00630 Glyoxylate and dicarboxylate metabolism 4
bra00270 Cysteine and methionine metabolism 3
bra00566 Sulfoquinovose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 10
vvi03040 Spliceosome 2
vvi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 4
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 5
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
tae00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
tae00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 2
ghi00300 Lysine biosynthesis 2
ghi00470 D-Amino acid metabolism 2
ghi01230 Biosynthesis of amino acids 2
ghi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 2
ghi00300 Lysine biosynthesis 2
ghi00470 D-Amino acid metabolism 2
ghi01230 Biosynthesis of amino acids 2
ghi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 4
bna03082 ATP-dependent chromatin remodeling 2
bna03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 4
bna03082 ATP-dependent chromatin remodeling 2
bna03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 6
bdi03060 Protein export 4
bdi04145 Phagosome 3
bdi04142 Lysosome 2
bdi00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 4
nta03040 Spliceosome 3
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 4
nta03015 mRNA surveillance pathway 2
nta03040 Spliceosome 2
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 4
nta03015 mRNA surveillance pathway 2
nta03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5722559 819617 100798713 100787194 101246271 4352435 100282419 103859044 100257528 7478581 25500099 123110812 123159854 123169058 123396106 123444651 121206146 107891513 106438983 106447633 8066308 102589250 102624769 100838621 107769302 107832588 107797175
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