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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_17g734961v5   uncharacterized protein 
 ath-u.5   emb1441   zinc knuckle (CCHC-type) family protein 
 gma-u.5   100803745   nuclear export mediator factor NEMF 
 gma-u.5   100807437   nuclear export mediator factor NEMF 
 sly-u.5   101247552   uncharacterized LOC101247552 
 osa-u.5   4352539   uncharacterized LOC4352539 
 zma-u.5   103650540   nuclear export mediator factor NEMF 
 bra-r.6   103858423   nuclear export mediator factor Nemf 
 vvi-u.5   100267050   uncharacterized LOC100267050 
 vvi-u.5   104879273   uncharacterized LOC104879273 
 ppo-u.5   7471088   uncharacterized LOC7471088 
 mtr-u.5   112419084   nuclear export mediator factor NEMF 
 tae-r.2   123102560   nuclear export mediator factor Nemf 
 tae-r.2   123110751   nuclear export mediator factor Nemf 
 tae-r.2   123119741   nuclear export mediator factor Nemf 
 hvu-r.1   123451875   nuclear export mediator factor Nemf 
 ghi-r.1   107910558   nuclear export mediator factor Nemf 
 ghi-r.1   107951586   nuclear export mediator factor Nemf 
 bna-r.1   111214075   ribosome quality control complex subunit NEMF-like 
 bna-r.1   106388494   ribosome quality control complex subunit NEMF 
 sbi-r.1   8068082   nuclear export mediator factor NEMF 
 sot-r.1   102589147   nuclear export mediator factor NEMF 
 cit-r.1   102628947   uncharacterized LOC102628947 
 bdi-r.1   100835984   nuclear export mediator factor NEMF 
 nta-r.1   107781168   uncharacterized LOC107781168 
 nta-r.1   107801564   uncharacterized LOC107801564 

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Top 50 coexpressed genes to CHLRE_17g734961v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_17g734961v5 (cre-r.1 coexpression data)

CoexMap"5722654"


creCHLRE_17g734961v5 | Entrez gene ID : 5722654    
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 2 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 2
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:1990116 [list] [network] ribosome-associated ubiquitin-dependent protein catabolic process  (2 genes)  IEA  
GO:0072344 [list] [network] rescue of stalled ribosome  (6 genes)  IEA  
GO CC
GO:1990112 [list] [network] RQC complex  (4 genes)  IEA  
GO MF
GO:0043023 [list] [network] ribosomal large subunit binding  (10 genes)  IEA  
GO:0000049 [list] [network] tRNA binding  (34 genes)  IEA  
Protein XP_042914984.1 [sequence] [blastp]
XP_042914985.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 9,  chlo 1  (predict for XP_042914984.1)
cyto 9,  chlo 1  (predict for XP_042914985.1)
Subcellular
localization
TargetP
mito 4  (predict for XP_042914984.1)
mito 4  (predict for XP_042914985.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_17g734961v5
ath-u.5
for
emb1441
gma-u.5
for
100803745
gma-u.5
for
100807437
sly-u.5
for
101247552
osa-u.5
for
4352539
zma-u.5
for
103650540
bra-r.6
for
103858423
vvi-u.5
for
100267050
vvi-u.5
for
104879273
ppo-u.5
for
7471088
mtr-u.5
for
112419084
tae-r.2
for
123102560
tae-r.2
for
123110751
tae-r.2
for
123119741
hvu-r.1
for
123451875
ghi-r.1
for
107910558
ghi-r.1
for
107951586
bna-r.1
for
111214075
bna-r.1
for
106388494
sbi-r.1
for
8068082
sot-r.1
for
102589147
cit-r.1
for
102628947
bdi-r.1
for
100835984
nta-r.1
for
107781168
nta-r.1
for
107801564


Ortholog ID: 9725
Species cre ath gma gma sly osa zma bra vvi vvi ppo mtr tae tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol CHLRE_17g734961v5 emb1441 LOC100803745 LOC100807437 LOC101247552 LOC4352539 LOC103650540 LOC103858423 LOC100267050 LOC104879273 LOC7471088 LOC112419084 LOC123102560 LOC123110751 LOC123119741 LOC123451875 LOC107910558 LOC107951586 LOC111214075 LOC106388494 LOC8068082 LOC102589147 LOC102628947 LOC100835984 LOC107781168 LOC107801564
Function* uncharacterized protein zinc knuckle (CCHC-type) family protein nuclear export mediator factor NEMF nuclear export mediator factor NEMF uncharacterized LOC101247552 uncharacterized LOC4352539 nuclear export mediator factor NEMF nuclear export mediator factor Nemf uncharacterized LOC100267050 uncharacterized LOC104879273 uncharacterized LOC7471088 nuclear export mediator factor NEMF nuclear export mediator factor Nemf nuclear export mediator factor Nemf nuclear export mediator factor Nemf nuclear export mediator factor Nemf nuclear export mediator factor Nemf nuclear export mediator factor Nemf ribosome quality control complex subunit NEMF-like ribosome quality control complex subunit NEMF nuclear export mediator factor NEMF nuclear export mediator factor NEMF uncharacterized LOC102628947 nuclear export mediator factor NEMF uncharacterized LOC107781168 uncharacterized LOC107801564
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
sly03013 Nucleocytoplasmic transport 2
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
bra03013 Nucleocytoplasmic transport 2
bra03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 3
ghi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 3
ghi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
sbi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03460 Fanconi anemia pathway 2
nta03015 mRNA surveillance pathway 2
nta03083 Polycomb repressive complex 2
nta00073 Cutin, suberine and wax biosynthesis 2
nta00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00073 Cutin, suberine and wax biosynthesis 2
nta00561 Glycerolipid metabolism 2
nta03015 mRNA surveillance pathway 2
nta03083 Polycomb repressive complex 2
nta04148 Efferocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5722654 835056 100803745 100807437 101247552 4352539 103650540 103858423 100267050 104879273 7471088 112419084 123102560 123110751 123119741 123451875 107910558 107951586 111214075 106388494 8068082 102589147 102628947 100835984 107781168 107801564
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