ATTED-II : GeneCoexpression result

Species	Gene	Description
cre-r.1	CHLRE_17g720750v5	uncharacterized protein
ath-u.5	AT5G53770	Nucleotidyltransferase family protein
gma-u.5	100811320	terminal nucleotidyltransferase 4A
sly-u.5	101268034	nucleotidyltransferase family protein
osa-u.5	4325901	uncharacterized LOC4325901
zma-u.5	103651371	terminal nucleotidyltransferase 4B
bra-r.6	103844845	terminal nucleotidyltransferase 4B
vvi-u.5	100259006	uncharacterized LOC100259006
ppo-u.5	18095590	uncharacterized LOC18095590
mtr-u.5	25487346	terminal nucleotidyltransferase 4A
tae-r.2	123079011	terminal nucleotidyltransferase 4B
tae-r.2	123061915	terminal nucleotidyltransferase 4B
tae-r.2	123070604	terminal nucleotidyltransferase 4B
hvu-r.1	123444076	terminal nucleotidyltransferase 4B
ghi-r.1	107918027	terminal nucleotidyltransferase 4A
ghi-r.1	107952110	terminal nucleotidyltransferase 4A
bna-r.1	106417366	terminal nucleotidyltransferase 4B
bna-r.1	106371278	terminal nucleotidyltransferase 4B-like
sbi-r.1	8067999	non-canonical poly(A) RNA polymerase PAPD5
sot-r.1	102596617	non-canonical poly(A) RNA polymerase PAPD5
cit-r.1	127899945	poly(A) RNA polymerase protein 2-like
cit-r.1	102623093	uncharacterized LOC102623093
bdi-r.1	100828283	non-canonical poly(A) RNA polymerase PAPD5
nta-r.1	107822004	uncharacterized LOC107822004
nta-r.1	107817449	uncharacterized LOC107817449

Annotation

functional annotation

KEGG

cre03018 [list] [network] RNA degradation (48 genes)

GO BP

GO:0031123 [list] [network] RNA 3'-end processing

(40 genes)

IEA

GO CC

GO:0031499 [list] [network] TRAMP complex	(4 genes)	IEA
GO:0005730 [list] [network] nucleolus	(152 genes)	IEA

GO MF

GO:1990817 [list] [network] poly(A) RNA polymerase activity	(5 genes)	IEA
GO:0003729 [list] [network] mRNA binding	(109 genes)	IEA

Protein

XP_042914714.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 5, chlo 2, vacu 2

(predict for XP_042914714.1)

Subcellular
localization
TargetP

other 3

(predict for XP_042914714.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_17g720750v5	ath-u.5 for AT5G53770	gma-u.5 for 100811320	sly-u.5 for 101268034	osa-u.5 for 4325901	zma-u.5 for 103651371	bra-r.6 for 103844845	vvi-u.5 for 100259006	ppo-u.5 for 18095590	mtr-u.5 for 25487346	tae-r.2 for 123079011	tae-r.2 for 123061915	tae-r.2 for 123070604	hvu-r.1 for 123444076	ghi-r.1 for 107918027	ghi-r.1 for 107952110	bna-r.1 for 106417366	bna-r.1 for 106371278	sbi-r.1 for 8067999	sot-r.1 for 102596617	cit-r.1 for 127899945	cit-r.1 for 102623093	bdi-r.1 for 100828283	nta-r.1 for 107822004	nta-r.1 for 107817449

Ortholog

Ortholog ID: 10393

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

Function^*

uncharacterized protein

Nucleotidyltransferase family protein

terminal nucleotidyltransferase 4A

nucleotidyltransferase family protein

uncharacterized LOC4325901

terminal nucleotidyltransferase 4B

uncharacterized LOC100259006

uncharacterized LOC18095590

terminal nucleotidyltransferase 4A

terminal nucleotidyltransferase 4B

terminal nucleotidyltransferase 4A

terminal nucleotidyltransferase 4B

terminal nucleotidyltransferase 4B-like

non-canonical poly(A) RNA polymerase PAPD5

poly(A) RNA polymerase protein 2-like

uncharacterized LOC102623093

non-canonical poly(A) RNA polymerase PAPD5

uncharacterized LOC107822004

uncharacterized LOC107817449

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	5
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	2
sly03040	Spliceosome	2
sly03008	Ribosome biogenesis in eukaryotes	2
sly03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	4
osa03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03018	RNA degradation	3
zma03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	3
ppo01200	Carbon metabolism	2
ppo01230	Biosynthesis of amino acids	2
ppo03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	3
tae03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	4
tae03018	RNA degradation	3
tae00030	Pentose phosphate pathway	3
tae00230	Purine metabolism	3
tae01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	3
tae03008	Ribosome biogenesis in eukaryotes	3
tae00030	Pentose phosphate pathway	3
tae00230	Purine metabolism	3
tae01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	3
ghi03008	Ribosome biogenesis in eukaryotes	2
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	3
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	4
bdi00770	Pantothenate and CoA biosynthesis	2
bdi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	5
nta03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	6
nta03018	RNA degradation	2

Expression

Expression pattern

Entrez Gene ID^*

5722682

835458

100811320

101268034

4325901

103651371

103844845

100259006

18095590

25487346

123079011

123061915

123070604

123444076

107918027

107952110

106417366

106371278

8067999

102596617

127899945

102623093

100828283

107822004

107817449

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to CHLRE_17g720750v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_17g720750v5 (cre-r.1 coexpression data)


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	1	1	1	1	1	1	1	1	1	3	1	2	2	1	1	2	1	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_17g720750v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_17g720750v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**