ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cre-r.1	CHLRE_17g721600v5	uncharacterized protein
ath-u.5	AT4G22350	Ubiquitin C-terminal hydrolases superfamily protein
ath-u.5	AT4G22410	U4/U6.U5 tri-snRNP-associated-like protein
ath-u.5	AT4G22285	Ubiquitin C-terminal hydrolases superfamily protein
gma-u.5	100792529	U4/U6.U5 tri-snRNP-associated protein 2
gma-u.5	100792642	U4/U6.U5 tri-snRNP-associated protein 2
sly-u.5	101263781	uncharacterized LOC101263781
osa-u.5	4347019	uncharacterized LOC4347019
zma-u.5	100285671	uncharacterized LOC100285671
bra-r.6	103859993	U4/U6.U5 tri-snRNP-associated protein 2
bra-r.6	117126225	U4/U6.U5 tri-snRNP-associated protein 2-like
bra-r.6	103861306	U4/U6.U5 tri-snRNP-associated protein 2
vvi-u.5	100251887	uncharacterized LOC100251887
ppo-u.5	7455836	uncharacterized LOC7455836
ppo-u.5	7463667	uncharacterized LOC7463667
mtr-u.5	25492882	U4/U6.U5 tri-snRNP-associated protein 2
mtr-u.5	11437744	U4/U6.U5 tri-snRNP-associated protein 2
tae-r.2	123167533	U4/U6.U5 tri-snRNP-associated protein 2
tae-r.2	123150293	U4/U6.U5 tri-snRNP-associated protein 2
tae-r.2	123088443	U4/U6.U5 tri-snRNP-associated protein 2
hvu-r.1	123426749	U4/U6.U5 tri-snRNP-associated protein 2-like
ghi-r.1	107910074	U4/U6.U5 tri-snRNP-associated protein 2
ghi-r.1	107963714	U4/U6.U5 tri-snRNP-associated protein 2
ghi-r.1	107960167	U4/U6.U5 tri-snRNP-associated protein 2
bna-r.1	106376520	U4/U6.U5 tri-snRNP-associated protein 2-like
bna-r.1	106440444	U4/U6.U5 tri-snRNP-associated protein 2
sbi-r.1	8065093	U4/U6.U5 tri-snRNP-associated protein 2
sot-r.1	102603602	U4/U6.U5 tri-snRNP-associated protein 2-like
cit-r.1	102617640	uncharacterized LOC102617640
bdi-r.1	100842673	U4/U6.U5 tri-snRNP-associated protein 2
nta-r.1	107814517	uncharacterized LOC107814517
nta-r.1	107777708	uncharacterized LOC107777708
nta-r.1	107775060	uncharacterized LOC107775060

Top 50 coexpressed genes to CHLRE_17g721600v5 (cre-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CHLRE_17g721600v5 (cre-r.1 coexpression data)

CoexMap"5722698"

[Cytoscape]

Annotation

functional annotation

KEGG

cre03040 [list] [network] Spliceosome (105 genes)

GO BP

GO:0016579 [list] [network] protein deubiquitination

(65 genes)

IEA

GO CC

GO MF

GO:0004843 [list] [network] cysteine-type deubiquitinase activity

(41 genes)

IEA

Protein

XP_042914728.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, nucl 3, chlo 1, cysk_nucl 1

(predict for XP_042914728.1)

Subcellular
localization
TargetP

other 8

(predict for XP_042914728.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_17g721600v5	ath-u.5 for AT4G22350	ath-u.5 for AT4G22410	ath-u.5 for AT4G22285	gma-u.5 for 100792529	gma-u.5 for 100792642	sly-u.5 for 101263781	osa-u.5 for 4347019	zma-u.5 for 100285671	bra-r.6 for 103859993	bra-r.6 for 117126225	bra-r.6 for 103861306	vvi-u.5 for 100251887	ppo-u.5 for 7455836	ppo-u.5 for 7463667	mtr-u.5 for 25492882	mtr-u.5 for 11437744	tae-r.2 for 123167533	tae-r.2 for 123150293	tae-r.2 for 123088443	hvu-r.1 for 123426749	ghi-r.1 for 107910074	ghi-r.1 for 107963714	ghi-r.1 for 107960167	bna-r.1 for 106376520	bna-r.1 for 106440444	sbi-r.1 for 8065093	sot-r.1 for 102603602	cit-r.1 for 102617640	bdi-r.1 for 100842673	nta-r.1 for 107814517	nta-r.1 for 107777708	nta-r.1 for 107775060

Ortholog

Ortholog ID: 5806

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

Function^*

uncharacterized protein

Ubiquitin C-terminal hydrolases superfamily protein

U4/U6.U5 tri-snRNP-associated-like protein

Ubiquitin C-terminal hydrolases superfamily protein