ATTED-II : GeneCoexpression result

Species	Gene	Description
cre-r.1	CHLRE_17g725450v5	uncharacterized protein
ath-u.5	DCAF1	DDB1-CUL4 associated factor 1
gma-u.5	100800133	DDB1- and CUL4-associated factor homolog 1
gma-u.5	100796030	DDB1- and CUL4-associated factor homolog 1
gma-u.5	100789761	DDB1- and CUL4-associated factor homolog 1
sly-u.5	101254121	DDB1- and CUL4-associated factor homolog 1
osa-u.5	107280668	DDB1- and CUL4-associated factor homolog 1
zma-u.5	103646181	DDB1- and CUL4-associated factor homolog 1
zma-u.5	100502197	uncharacterized LOC100502197
bra-r.6	103834625	DDB1- and CUL4-associated factor homolog 1
bra-r.6	103862033	DDB1- and CUL4-associated factor homolog 1
vvi-u.5	100254299	DDB1- and CUL4-associated factor homolog 1
ppo-u.5	18100804	DDB1- and CUL4-associated factor homolog 1
mtr-u.5	11427341	DDB1- and CUL4-associated factor homolog 1
tae-r.2	123191206	DDB1- and CUL4-associated factor homolog 1
tae-r.2	123055392	DDB1- and CUL4-associated factor homolog 1
hvu-r.1	123428539	DDB1- and CUL4-associated factor homolog 1
ghi-r.1	107948687	DDB1- and CUL4-associated factor homolog 1
ghi-r.1	107940052	DDB1- and CUL4-associated factor homolog 1
bna-r.1	106424184	DDB1- and CUL4-associated factor homolog 1
bna-r.1	106409323	DDB1- and CUL4-associated factor homolog 1
bna-r.1	106409322	DDB1- and CUL4-associated factor homolog 1
sbi-r.1	8076518	DDB1- and CUL4-associated factor homolog 1
sot-r.1	102588054	DDB1- and CUL4-associated factor homolog 1
cit-r.1	102628260	DDB1- and CUL4-associated factor homolog 1
bdi-r.1	100837527	DDB1- and CUL4-associated factor homolog 1
nta-r.1	107796179	DDB1- and CUL4-associated factor homolog 1
nta-r.1	107822817	DDB1- and CUL4-associated factor homolog 1

Annotation

functional annotation

KEGG

GO BP

GO:0016567 [list] [network] protein ubiquitination

(136 genes)

IEA

GO CC

GO:0080008 [list] [network] Cul4-RING E3 ubiquitin ligase complex	(13 genes)	IEA
GO:0005634 [list] [network] nucleus	(1576 genes)	IEA

GO MF

GO:0005515 [list] [network] protein binding

(1927 genes)

IEA

Protein

XP_042914793.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 7, chlo 2

(predict for XP_042914793.1)

Subcellular
localization
TargetP

mito 7, other 5

(predict for XP_042914793.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_17g725450v5	ath-u.5 for DCAF1	gma-u.5 for 100800133	gma-u.5 for 100796030	gma-u.5 for 100789761	sly-u.5 for 101254121	osa-u.5 for 107280668	zma-u.5 for 103646181	zma-u.5 for 100502197	bra-r.6 for 103834625	bra-r.6 for 103862033	vvi-u.5 for 100254299	ppo-u.5 for 18100804	mtr-u.5 for 11427341	tae-r.2 for 123191206	tae-r.2 for 123055392	hvu-r.1 for 123428539	ghi-r.1 for 107948687	ghi-r.1 for 107940052	bna-r.1 for 106424184	bna-r.1 for 106409323	bna-r.1 for 106409322	sbi-r.1 for 8076518	sot-r.1 for 102588054	cit-r.1 for 102628260	bdi-r.1 for 100837527	nta-r.1 for 107796179	nta-r.1 for 107822817

Ortholog

Ortholog ID: 8108

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

DCAF1

Function^*

uncharacterized protein

DDB1-CUL4 associated factor 1

DDB1- and CUL4-associated factor homolog 1

uncharacterized LOC100502197

DDB1- and CUL4-associated factor homolog 1

DDB1- and CUL4-associated factor homolog 1-like

DDB1- and CUL4-associated factor homolog 1

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	5
ath04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	4
gma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03420	Nucleotide excision repair	3
gma04136	Autophagy - other	2
gma03083	Polycomb repressive complex	2
gma03250	Viral life cycle - HIV-1	2
gma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2
gma03082	ATP-dependent chromatin remodeling	2
gma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	4
zma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	5
bra03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03013	Nucleocytoplasmic transport	5
bra03008	Ribosome biogenesis in eukaryotes	3
bra03250	Viral life cycle - HIV-1	2
bra03040	Spliceosome	2
bra03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03082	ATP-dependent chromatin remodeling	2
ppo03083	Polycomb repressive complex	2
ppo03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	5
mtr03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03083	Polycomb repressive complex	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	8
ghi00230	Purine metabolism	3
ghi03008	Ribosome biogenesis in eukaryotes	2
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	8
ghi00230	Purine metabolism	3
ghi03008	Ribosome biogenesis in eukaryotes	2
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03013	Nucleocytoplasmic transport	2
sbi03083	Polycomb repressive complex	2
sbi03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04120	Ubiquitin mediated proteolysis	2
cit03013	Nucleocytoplasmic transport	2
cit04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03022	Basal transcription factors	2
nta03020	RNA polymerase	2
nta03420	Nucleotide excision repair	2
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03022	Basal transcription factors	2
nta03020	RNA polymerase	2
nta03420	Nucleotide excision repair	2
nta04120	Ubiquitin mediated proteolysis	2

Expression

Expression pattern

Entrez Gene ID^*

5722771

829244

100800133

100796030

100789761

101254121

107280668

103646181

100502197

103834625

103862033

100254299

18100804

11427341

123191206

123055392

123428539

107948687

107940052

106409323

106409322

106390039

8076518

102588054

102628260

100837527

107796179

107822817

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to CHLRE_17g725450v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_17g725450v5 (cre-r.1 coexpression data)


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	1	3	1	1	2	2	1	1	1	2	1	2	3	1	1	1	1	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_17g725450v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_17g725450v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**