ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cre-r.1	CHLRE_09g400738v5	uncharacterized protein
ath-u.5	AT1G14260	RING/FYVE/PHD zinc finger superfamily protein
ath-u.5	AT5G62460	RING/FYVE/PHD zinc finger superfamily protein
gma-u.5	100805050	E3 ubiquitin-protein ligase MARCHF4
gma-u.5	100817542	uncharacterized LOC100817542
gma-u.5	100812998	uncharacterized LOC100812998
sly-u.5	101247951	uncharacterized LOC101247951
sly-u.5	101267890	uncharacterized LOC101267890
osa-u.5	4347044	uncharacterized LOC4347044
osa-u.5	4329759	uncharacterized LOC4329759
zma-u.5	100194121	uncharacterized LOC100194121
zma-u.5	103636408	uncharacterized LOC103636408
bra-r.6	103874679	uncharacterized LOC103874679
bra-r.6	103873230	uncharacterized LOC103873230
bra-r.6	103872120	uncharacterized LOC103872120
vvi-u.5	100250124	uncharacterized LOC100250124
vvi-u.5	100259487	uncharacterized LOC100259487
vvi-u.5	100258737	uncharacterized LOC100258737
ppo-u.5	7487361	uncharacterized LOC7487361
ppo-u.5	7494619	uncharacterized LOC7494619
ppo-u.5	7492938	uncharacterized LOC7492938
mtr-u.5	11418055	uncharacterized LOC11418055
mtr-u.5	11437485	uncharacterized LOC11437485
mtr-u.5	11421871	uncharacterized LOC11421871
tae-r.2	123096906	uncharacterized LOC123096906
tae-r.2	123058910	uncharacterized LOC123058910
hvu-r.1	123445072	uncharacterized LOC123445072
hvu-r.1	123442512	uncharacterized LOC123442512
ghi-r.1	107916558	uncharacterized LOC107916558
ghi-r.1	107896792	E3 ubiquitin-protein ligase MARCHF8
ghi-r.1	107912131	uncharacterized LOC107912131
bna-r.1	106365366	uncharacterized LOC106365366
bna-r.1	BNAC07G20670D	uncharacterized BNAC07G20670D
bna-r.1	106368825	uncharacterized LOC106368825
sbi-r.1	110432262	uncharacterized LOC110432262
sbi-r.1	110435737	uncharacterized LOC110435737
sbi-r.1	110435038	uncharacterized LOC110435038
sot-r.1	102579093	uncharacterized LOC102579093
sot-r.1	102582422	uncharacterized LOC102582422
sot-r.1	102582687	uncharacterized LOC102582687
cit-r.1	102615152	uncharacterized LOC102615152
cit-r.1	102616298	uncharacterized LOC102616298
cit-r.1	102616509	hypothetical protein
bdi-r.1	100827574	uncharacterized LOC100827574
bdi-r.1	100838458	uncharacterized LOC100838458
bdi-r.1	100843600	uncharacterized LOC100843600
nta-r.1	107795124	uncharacterized LOC107795124
nta-r.1	107794884	uncharacterized LOC107794884

Top 50 coexpressed genes to CHLRE_09g400738v5 (cre-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CHLRE_09g400738v5 (cre-r.1 coexpression data)

CoexMap"5723150"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0016567 [list] [network] protein ubiquitination

(136 genes)

IEA

GO CC

GO:0016020 [list] [network] membrane

(1543 genes)

IEA

GO MF

GO:0004842 [list] [network] ubiquitin-protein transferase activity	(132 genes)	IEA
GO:0008270 [list] [network] zinc ion binding	(213 genes)	IEA

Protein

XP_001697580.2 [sequence] [blastp]

Subcellular
localization
wolf

mito 6, chlo 1, cyto 1

(predict for XP_001697580.2)

Subcellular
localization
TargetP

other 7

(predict for XP_001697580.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_09g400738v5	ath-u.5 for AT1G14260	ath-u.5 for AT5G62460	gma-u.5 for 100805050	gma-u.5 for 100817542	gma-u.5 for 100812998	sly-u.5 for 101247951	sly-u.5 for 101267890	osa-u.5 for 4347044	osa-u.5 for 4329759	zma-u.5 for 100194121	zma-u.5 for 103636408	bra-r.6 for 103874679	bra-r.6 for 103873230	bra-r.6 for 103872120	vvi-u.5 for 100250124	vvi-u.5 for 100259487	vvi-u.5 for 100258737	ppo-u.5 for 7487361	ppo-u.5 for 7494619	ppo-u.5 for 7492938	mtr-u.5 for 11418055	mtr-u.5 for 11437485	mtr-u.5 for 11421871	tae-r.2 for 123096906	tae-r.2 for 123058910	hvu-r.1 for 123445072	hvu-r.1 for 123442512	ghi-r.1 for 107916558	ghi-r.1 for 107896792	ghi-r.1 for 107912131	bna-r.1 for 106365366	bna-r.1 for BNAC07G20670D	bna-r.1 for 106368825	sbi-r.1 for 110432262	sbi-r.1 for 110435737	sbi-r.1 for 110435038	sot-r.1 for 102579093	sot-r.1 for 102582422	sot-r.1 for 102582687	cit-r.1 for 102615152	cit-r.1 for 102616298	cit-r.1 for 102616509	bdi-r.1 for 100827574	bdi-r.1 for 100838458	bdi-r.1 for 100843600	nta-r.1 for 107795124	nta-r.1 for 107794884

Ortholog

Ortholog ID: 308

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

Function^*

uncharacterized protein

RING/FYVE/PHD zinc finger superfamily protein

uncharacterized LOC100817542

uncharacterized LOC100812120

uncharacterized LOC101260808

uncharacterized LOC101256764

uncharacterized LOC4329759

uncharacterized LOC4324964

uncharacterized LOC100194121

protein binding protein

uncharacterized LOC100193371

uncharacterized LOC103874679

uncharacterized LOC103872120

uncharacterized LOC100250124

uncharacterized LOC100259487

uncharacterized LOC100256824

uncharacterized LOC7492938

uncharacterized LOC7475543

uncharacterized LOC18104586

uncharacterized LOC11418055

uncharacterized LOC11437485

uncharacterized LOC11421871

uncharacterized LOC123096906

uncharacterized LOC123086136

uncharacterized LOC123121689

uncharacterized LOC123445072

uncharacterized LOC123442512

uncharacterized LOC123448344

uncharacterized LOC107916558

uncharacterized LOC107946515

uncharacterized BNACNNG45990D

uncharacterized LOC125591300

uncharacterized LOC110432262

uncharacterized LOC110435737

uncharacterized LOC8079045

uncharacterized LOC102584648

uncharacterized LOC102602348

uncharacterized LOC102604544

uncharacterized LOC102615152

hypothetical protein

uncharacterized LOC102627455

uncharacterized LOC100838458

uncharacterized LOC100843600

uncharacterized LOC100834851

uncharacterized LOC107760406

uncharacterized LOC107832834

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04144	Endocytosis	2
cre04145	Phagosome	2
cre04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	4
gma04626	Plant-pathogen interaction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2
gma04141	Protein processing in endoplasmic reticulum	2
gma04144	Endocytosis	2
gma00510	N-Glycan biosynthesis	2
gma00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04626	Plant-pathogen interaction	4
sly04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00460	Cyanoamino acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00073	Cutin, suberine and wax biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04712	Circadian rhythm - plant	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04626	Plant-pathogen interaction	3
zma04144	Endocytosis	3
zma03250	Viral life cycle - HIV-1	3
zma03272	Virion - Hepatitis viruses	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	2
bra03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	2
vvi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	2
vvi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00562	Inositol phosphate metabolism	2
ppo04070	Phosphatidylinositol signaling system	2
ppo04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00052	Galactose metabolism	3
tae00520	Amino sugar and nucleotide sugar metabolism	3
tae01250	Biosynthesis of nucleotide sugars	3
tae04075	Plant hormone signal transduction	3
tae04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04145	Phagosome	3
tae04148	Efferocytosis	3
tae04517	IgSF CAM signaling	3
tae04518	Integrin signaling	3
tae04620	Toll-like receptor signaling pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	3
hvu04144	Endocytosis	3
hvu03083	Polycomb repressive complex	2
hvu04120	Ubiquitin mediated proteolysis	2
hvu04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04148	Efferocytosis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04141	Protein processing in endoplasmic reticulum	2
ghi03272	Virion - Hepatitis viruses	2
ghi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00561	Glycerolipid metabolism	2
bna04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04016	MAPK signaling pathway - plant	4
bna04626	Plant-pathogen interaction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04142	Lysosome	2
sbi03040	Spliceosome	2
sbi03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	3
sot03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00500	Starch and sucrose metabolism	6
sot00640	Propanoate metabolism	2
sot04075	Plant hormone signal transduction	2
sot00280	Valine, leucine and isoleucine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	3
cit04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00062	Fatty acid elongation	2
bdi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	2
bdi03060	Protein export	2
bdi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	2

Expression

Expression pattern

Entrez Gene ID^*

5723150

837987

836366

100817542

100812120

101260808

101256764

4329759

4324964

100194121

100284488

100193371

103874679

103872120

100250124

100259487

100256824

7492938

7475543

18104586

11418055

11437485

11421871

123096906

123086136

123121689

123445072

123442512

123448344

107916558

107946515

106375442

125591300

110432262

110435737

8079045

102584648

102602348

102604544

102615152

102616509

102627455

100838458

100843600

100834851

107760406

107832834

The preparation time of this page was 0.4 [sec].


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	2	3	2	2	2	3	3	3	3	2	2	3	3	3	3	3	3	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_09g400738v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_09g400738v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**