ATTED-II : GeneCoexpression result

Species	Gene	Description
cre-r.1	CHLRE_06g278208v5	uncharacterized protein
ath-u.5	PUR ALPHA-1	purin-rich alpha 1
gma-u.5	100782805	transcription factor Pur-alpha 1-like
gma-u.5	100499955	transcription factor Pur-alpha 1
sly-u.5	101266257	transcription factor Pur-alpha 1
osa-u.5	4325116	transcription factor Pur-alpha 1
zma-u.5	100283497	PUR ALPHA-1
zma-u.5	100274069	Transcription factor Pur-alpha 1
bra-r.6	103867664	transcription factor Pur-alpha 1
vvi-u.5	100246785	transcription factor Pur-alpha 1
ppo-u.5	7483220	transcription factor Pur-alpha 1
ppo-u.5	7461336	transcription factor Pur-alpha 1
mtr-u.5	11443938	transcription factor Pur-alpha 1
tae-r.2	123078078	transcription factor Pur-alpha 1
tae-r.2	123069592	transcription factor Pur-alpha 1
tae-r.2	123061000	transcription factor Pur-alpha 1
hvu-r.1	123443424	transcription factor Pur-alpha 1
ghi-r.1	107907528	transcription factor Pur-alpha 1
ghi-r.1	107927126	transcription factor Pur-alpha 1
ghi-r.1	107907385	transcription factor Pur-alpha 1
bna-r.1	106451330	transcription factor Pur-alpha 1
bna-r.1	106396423	transcription factor Pur-alpha 1
sbi-r.1	8074495	transcription factor Pur-alpha 1
sot-r.1	102589727	transcription factor Pur-alpha 1
cit-r.1	102631101	transcription factor Pur-alpha 1
bdi-r.1	100825709	transcription factor Pur-alpha 1
nta-r.1	107793912	transcription factor Pur-alpha 1
nta-r.1	107783074	transcription factor Pur-alpha 1

Annotation

functional annotation

KEGG

GO BP

GO:0006357 [list] [network] regulation of transcription by RNA polymerase II

(190 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(1576 genes)

IEA

GO MF

GO:0032422 [list] [network] purine-rich negative regulatory element binding	(1 genes)	IEA
GO:0000977 [list] [network] RNA polymerase II transcription regulatory region sequence-specific DNA binding	(37 genes)	IEA
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific	(67 genes)	IEA

Protein

XP_042923843.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, chlo 1, mito 1, pero 1, chlo_mito 1

(predict for XP_042923843.1)

Subcellular
localization
TargetP

other 8

(predict for XP_042923843.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_06g278208v5	ath-u.5 for PUR ALPHA-1	gma-u.5 for 100782805	gma-u.5 for 100499955	sly-u.5 for 101266257	osa-u.5 for 4325116	zma-u.5 for 100283497	zma-u.5 for 100274069	bra-r.6 for 103867664	vvi-u.5 for 100246785	ppo-u.5 for 7483220	ppo-u.5 for 7461336	mtr-u.5 for 11443938	tae-r.2 for 123078078	tae-r.2 for 123069592	tae-r.2 for 123061000	hvu-r.1 for 123443424	ghi-r.1 for 107907528	ghi-r.1 for 107927126	ghi-r.1 for 107907385	bna-r.1 for 106451330	bna-r.1 for 106396423	sbi-r.1 for 8074495	sot-r.1 for 102589727	cit-r.1 for 102631101	bdi-r.1 for 100825709	nta-r.1 for 107793912	nta-r.1 for 107783074

Ortholog

Ortholog ID: 6821

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

Function^*

uncharacterized protein

purin-rich alpha 1

transcription factor Pur-alpha 1-like

transcription factor Pur-alpha 1

PUR ALPHA-1

Transcription factor Pur-alpha 1

transcription factor Pur-alpha 1

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00020	Citrate cycle (TCA cycle)	5
gma01200	Carbon metabolism	5
gma01210	2-Oxocarboxylic acid metabolism	5
gma00785	Lipoic acid metabolism	3
gma00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00190	Oxidative phosphorylation	10
gma00020	Citrate cycle (TCA cycle)	3
gma01200	Carbon metabolism	3
gma04148	Efferocytosis	2
gma00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00190	Oxidative phosphorylation	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	10
zma03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	6
vvi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00190	Oxidative phosphorylation	5
ppo04145	Phagosome	4
ppo04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00710	Carbon fixation by Calvin cycle	5
mtr01200	Carbon metabolism	5
mtr01230	Biosynthesis of amino acids	4
mtr00630	Glyoxylate and dicarboxylate metabolism	3
mtr00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00340	Histidine metabolism	3
tae01230	Biosynthesis of amino acids	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00340	Histidine metabolism	3
tae01230	Biosynthesis of amino acids	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00340	Histidine metabolism	3
tae01230	Biosynthesis of amino acids	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00564	Glycerophospholipid metabolism	2
ghi00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00220	Arginine biosynthesis	2
bna00250	Alanine, aspartate and glutamate metabolism	2
bna00910	Nitrogen metabolism	2
bna01200	Carbon metabolism	2
bna00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00220	Arginine biosynthesis	5
bna00250	Alanine, aspartate and glutamate metabolism	5
bna00910	Nitrogen metabolism	5
bna01200	Carbon metabolism	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	3
sbi03013	Nucleocytoplasmic transport	2
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	6
bdi03015	mRNA surveillance pathway	4
bdi03420	Nucleotide excision repair	2
bdi04141	Protein processing in endoplasmic reticulum	2

Expression

Expression pattern

Entrez Gene ID^*

5723552

817768

100782805

100499955

101266257

4325116

100283497

100274069

103867664

100246785

7483220

7461336

11443938

123078078

123069592

123061000

123443424

107927126

107907385

107962559

106451330

106396423

8074495

102589727

102631101

100825709

107793912

107783074

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to CHLRE_06g278208v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_06g278208v5 (cre-r.1 coexpression data)


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	1	2	1	1	2	1	1	2	1	3	1	3	2	1	1	1	1	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_06g278208v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_06g278208v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**