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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_16g652950v5   uncharacterized protein 
 ath-u.5   AT3G42660   transducin family protein / WD-40 repeat family protein 
 gma-u.5   100818807   WD repeat and HMG-box DNA-binding protein 1 
 gma-u.5   100809300   WD repeat and HMG-box DNA-binding protein 1 
 sly-u.5   101264414   protein ENHANCER OF LHP1 1 
 osa-u.5   4346476   protein ENHANCER OF LHP1 1 
 zma-u.5   103632410   WD repeat and HMG-box DNA-binding protein 1 
 bra-r.6   103848021   WD repeat and HMG-box DNA-binding protein 1 
 vvi-u.5   100245742   protein ENHANCER OF LHP1 1 
 ppo-u.5   7484726   protein ENHANCER OF LHP1 1 
 mtr-u.5   11416229   WD repeat and HMG-box DNA-binding protein 1 
 tae-r.2   123120808   WD repeat and HMG-box DNA-binding protein 1 
 tae-r.2   123111540   WD repeat and HMG-box DNA-binding protein 1 
 tae-r.2   123103346   WD repeat and HMG-box DNA-binding protein 1 
 hvu-r.1   123452531   WD repeat and HMG-box DNA-binding protein 1 
 ghi-r.1   107949761   WD repeat and HMG-box DNA-binding protein 1 
 ghi-r.1   107887072   WD repeat and HMG-box DNA-binding protein 1 
 bna-r.1   106376323   protein ENHANCER OF LHP1 1 
 bna-r.1   111198624   protein ENHANCER OF LHP1 1 
 sbi-r.1   8085377   WD repeat and HMG-box DNA-binding protein 1 
 sot-r.1   102578746   WD repeat and HMG-box DNA-binding protein 1 
 cit-r.1   102606793   protein ENHANCER OF LHP1 1 
 bdi-r.1   100826226   WD repeat and HMG-box DNA-binding protein 1 
 nta-r.1   107820400   protein ENHANCER OF LHP1 1 
 nta-r.1   107814793   protein ENHANCER OF LHP1 1-like 

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Top 50 coexpressed genes to CHLRE_16g652950v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_16g652950v5 (cre-r.1 coexpression data)

CoexMap"5723703"


creCHLRE_16g652950v5 | Entrez gene ID : 5723703    
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 2 1 1 1 1 1 1 1 3 1 2 2 1 1 1 1 2
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006261 [list] [network] DNA-templated DNA replication  (66 genes)  IEA  
GO:0000278 [list] [network] mitotic cell cycle  (160 genes)  IEA  
GO:0006281 [list] [network] DNA repair  (229 genes)  IEA  
GO CC
GO:0043596 [list] [network] nuclear replication fork  (19 genes)  IEA  
GO MF
GO:0003682 [list] [network] chromatin binding  (81 genes)  IEA  
GO:0005515 [list] [network] protein binding  (1927 genes)  IEA  
Protein XP_042915476.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 7,  chlo 1,  nucl 1,  mito 1,  plas 1,  chlo_mito 1,  nucl_plas 1,  mito_plas 1  (predict for XP_042915476.1)
Subcellular
localization
TargetP
other 7  (predict for XP_042915476.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_16g652950v5
ath-u.5
for
AT3G42660
gma-u.5
for
100818807
gma-u.5
for
100809300
sly-u.5
for
101264414
osa-u.5
for
4346476
zma-u.5
for
103632410
bra-r.6
for
103848021
vvi-u.5
for
100245742
ppo-u.5
for
7484726
mtr-u.5
for
11416229
tae-r.2
for
123120808
tae-r.2
for
123111540
tae-r.2
for
123103346
hvu-r.1
for
123452531
ghi-r.1
for
107949761
ghi-r.1
for
107887072
bna-r.1
for
106376323
bna-r.1
for
111198624
sbi-r.1
for
8085377
sot-r.1
for
102578746
cit-r.1
for
102606793
bdi-r.1
for
100826226
nta-r.1
for
107820400
nta-r.1
for
107814793


Ortholog ID: 10125
Species cre ath gma gma sly osa zma bra vvi ppo mtr tae tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol CHLRE_16g652950v5 AT3G42660 LOC100818807 LOC100809300 LOC101264414 LOC4346476 LOC103632410 LOC103848021 LOC100245742 LOC7484726 LOC11416229 LOC123120808 LOC123111540 LOC123103346 LOC123452531 LOC107949761 LOC107887072 LOC106376323 LOC111198624 LOC8085377 LOC102578746 LOC102606793 LOC100826226 LOC107820400 LOC107814793
Function* uncharacterized protein transducin family protein / WD-40 repeat family protein WD repeat and HMG-box DNA-binding protein 1 WD repeat and HMG-box DNA-binding protein 1 protein ENHANCER OF LHP1 1 protein ENHANCER OF LHP1 1 WD repeat and HMG-box DNA-binding protein 1 WD repeat and HMG-box DNA-binding protein 1 protein ENHANCER OF LHP1 1 protein ENHANCER OF LHP1 1 WD repeat and HMG-box DNA-binding protein 1 WD repeat and HMG-box DNA-binding protein 1 WD repeat and HMG-box DNA-binding protein 1 WD repeat and HMG-box DNA-binding protein 1 WD repeat and HMG-box DNA-binding protein 1 WD repeat and HMG-box DNA-binding protein 1 WD repeat and HMG-box DNA-binding protein 1 protein ENHANCER OF LHP1 1 protein ENHANCER OF LHP1 1 WD repeat and HMG-box DNA-binding protein 1 WD repeat and HMG-box DNA-binding protein 1 protein ENHANCER OF LHP1 1 WD repeat and HMG-box DNA-binding protein 1 protein ENHANCER OF LHP1 1 protein ENHANCER OF LHP1 1-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 13
gma00240 Pyrimidine metabolism 2
gma01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 11
sly03420 Nucleotide excision repair 3
sly03430 Mismatch repair 3
sly03440 Homologous recombination 2
sly03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 12
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03030 DNA replication 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 9
ppo00230 Purine metabolism 2
ppo00240 Pyrimidine metabolism 2
ppo00480 Glutathione metabolism 2
ppo01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 12
mtr03420 Nucleotide excision repair 3
mtr03430 Mismatch repair 2
mtr03440 Homologous recombination 2
mtr03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 6
tae00310 Lysine degradation 3
tae03083 Polycomb repressive complex 3
tae03410 Base excision repair 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 10
tae03410 Base excision repair 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 10
tae03440 Homologous recombination 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 11
ghi00270 Cysteine and methionine metabolism 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 11
ghi00270 Cysteine and methionine metabolism 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 9
bna03015 mRNA surveillance pathway 4
bna03020 RNA polymerase 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 7
bna03020 RNA polymerase 2
bna03015 mRNA surveillance pathway 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03030 DNA replication 10
sbi03460 Fanconi anemia pathway 3
sbi03420 Nucleotide excision repair 2
sbi03430 Mismatch repair 2
sbi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 9
sot03440 Homologous recombination 2
sot03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03030 DNA replication 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 10
bdi03440 Homologous recombination 3
bdi03460 Fanconi anemia pathway 3
bdi03420 Nucleotide excision repair 2
bdi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04814 Motor proteins 2
nta00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04814 Motor proteins 2
nta00270 Cysteine and methionine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5723703 823286 100818807 100809300 101264414 4346476 103632410 103848021 100245742 7484726 11416229 123120808 123111540 123103346 123452531 107949761 107887072 106376323 111198624 8085377 102578746 102606793 100826226 107820400 107814793
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