ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cre-r.1	CHLRE_10g446300v5	uncharacterized protein
cre-r.1	CHLRE_08g362700v5	uncharacterized protein
ath-u.5	AT3G17365	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
ath-u.5	AT3G60910	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
gma-u.5	100788922	methyltransferase-like protein 13-like
gma-u.5	100785452	EEF1A lysine methyltransferase 4
gma-u.5	100527880	putative SAM-dependent methyltransferase
sly-u.5	101260867	uncharacterized LOC101260867
osa-u.5	4346041	uncharacterized LOC4346041
osa-u.5	4344151	uncharacterized LOC4344151
osa-u.5	4338688	uncharacterized LOC4338688
zma-u.5	100285195	uncharacterized LOC100285195
zma-u.5	100217144	uncharacterized LOC100217144
zma-u.5	100194012	uncharacterized LOC100194012
bra-r.6	103839330	EEF1A lysine methyltransferase 4
bra-r.6	103859703	EEF1A lysine methyltransferase 4
bra-r.6	103830278	EEF1A lysine methyltransferase 4
vvi-u.5	100249334	S-adenosyl-L-methionine-dependent methyltransferase-like
vvi-u.5	100258533	uncharacterized LOC100258533
ppo-u.5	7482311	uncharacterized LOC7482311
ppo-u.5	7463071	uncharacterized LOC7463071
ppo-u.5	7468133	uncharacterized LOC7468133
mtr-u.5	11439119	EEF1A lysine methyltransferase 4
mtr-u.5	25479429	EEF1A lysine methyltransferase 4
tae-r.2	123131411	EEF1A lysine methyltransferase 4
tae-r.2	123168482	EEF1A lysine methyltransferase 4
tae-r.2	123187680	EEF1A lysine methyltransferase 4
hvu-r.1	123442312	EEF1A lysine methyltransferase 4-like
ghi-r.1	107910534	EEF1A lysine methyltransferase 4
ghi-r.1	121220368	EEF1A lysine methyltransferase 4
ghi-r.1	107951533	EEF1A lysine methyltransferase 4
bna-r.1	106454953	EEF1A lysine methyltransferase 4-like
bna-r.1	106452592	EEF1A lysine methyltransferase 4
sbi-r.1	8062426	methyltransferase-like protein 13
sbi-r.1	8076854	methyltransferase-like protein 13
sbi-r.1	8073128	methyltransferase-like protein 13
sot-r.1	102599138	methyltransferase-like protein 13
cit-r.1	102620671	uncharacterized LOC102620671
cit-r.1	102611693	uncharacterized LOC102611693
bdi-r.1	104583737	methyltransferase-like protein 13
bdi-r.1	100833988	EEF1A lysine methyltransferase 4
bdi-r.1	100832111	EEF1A lysine methyltransferase 4
nta-r.1	107814617	uncharacterized LOC107814617
nta-r.1	107830529	uncharacterized LOC107830529

Top 50 coexpressed genes to CHLRE_10g446300v5 (cre-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CHLRE_10g446300v5 (cre-r.1 coexpression data)

CoexMap"5723844"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0008757 [list] [network] S-adenosylmethionine-dependent methyltransferase activity

(132 genes)

IEA

Protein

XP_042920287.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 2, E.R._plas 2, plas 1, E.R. 1, cyto_pero 1, mito 1, pero 1, cyto_nucl 1

(predict for XP_042920287.1)

Subcellular
localization
TargetP

other 8

(predict for XP_042920287.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_10g446300v5	cre-r.1 for CHLRE_08g362700v5	ath-u.5 for AT3G17365	ath-u.5 for AT3G60910	gma-u.5 for 100788922	gma-u.5 for 100785452	gma-u.5 for 100527880	sly-u.5 for 101260867	osa-u.5 for 4346041	osa-u.5 for 4344151	osa-u.5 for 4338688	zma-u.5 for 100285195	zma-u.5 for 100217144	zma-u.5 for 100194012	bra-r.6 for 103839330	bra-r.6 for 103859703	bra-r.6 for 103830278	vvi-u.5 for 100249334	vvi-u.5 for 100258533	ppo-u.5 for 7482311	ppo-u.5 for 7463071	ppo-u.5 for 7468133	mtr-u.5 for 11439119	mtr-u.5 for 25479429	tae-r.2 for 123131411	tae-r.2 for 123168482	tae-r.2 for 123187680	hvu-r.1 for 123442312	ghi-r.1 for 107910534	ghi-r.1 for 121220368	ghi-r.1 for 107951533	bna-r.1 for 106454953	bna-r.1 for 106452592	sbi-r.1 for 8062426	sbi-r.1 for 8076854	sbi-r.1 for 8073128	sot-r.1 for 102599138	cit-r.1 for 102620671	cit-r.1 for 102611693	bdi-r.1 for 104583737	bdi-r.1 for 100833988	bdi-r.1 for 100832111	nta-r.1 for 107814617	nta-r.1 for 107830529

Ortholog

Ortholog ID: 2468

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

Function^*

uncharacterized protein

S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

EEF1A lysine methyltransferase 4

putative SAM-dependent methyltransferase

eEF1A lysine and N-terminal methyltransferase

uncharacterized LOC101260867

uncharacterized LOC4346041

uncharacterized LOC4344151

uncharacterized LOC4338688

uncharacterized LOC100285195

uncharacterized LOC100217144

uncharacterized LOC100194012

EEF1A lysine methyltransferase 4

S-adenosyl-L-methionine-dependent methyltransferase-like

uncharacterized LOC100258533

uncharacterized LOC7482311

uncharacterized LOC7463071

uncharacterized LOC7468133

EEF1A lysine methyltransferase 4

EEF1A lysine methyltransferase 4-like

EEF1A lysine methyltransferase 4

methyltransferase-like protein 13

uncharacterized LOC102620671

uncharacterized LOC102611693

methyltransferase-like protein 13

EEF1A lysine methyltransferase 4

uncharacterized LOC107814617

uncharacterized LOC107830529

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01200	Carbon metabolism	4
ath04146	Peroxisome	3
ath00630	Glyoxylate and dicarboxylate metabolism	2
ath04144	Endocytosis	2
ath04517	IgSF CAM signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04142	Lysosome	2
gma00510	N-Glycan biosynthesis	2
gma00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00440	Phosphonate and phosphinate metabolism	2
gma00564	Glycerophospholipid metabolism	2
gma00520	Amino sugar and nucleotide sugar metabolism	2
gma01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00260	Glycine, serine and threonine metabolism	2
bra00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03013	Nucleocytoplasmic transport	2
bra03015	mRNA surveillance pathway	2
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01230	Biosynthesis of amino acids	4
vvi00010	Glycolysis / Gluconeogenesis	2
vvi01200	Carbon metabolism	2
vvi00270	Cysteine and methionine metabolism	2
vvi00670	One carbon pool by folate	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00190	Oxidative phosphorylation	3
ppo00020	Citrate cycle (TCA cycle)	2
ppo00270	Cysteine and methionine metabolism	2
ppo00566	Sulfoquinovose metabolism	2
ppo00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr01200	Carbon metabolism	2
mtr04144	Endocytosis	2
mtr04145	Phagosome	2
mtr04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	9
mtr00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00053	Ascorbate and aldarate metabolism	3
tae04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04142	Lysosome	3
tae03022	Basal transcription factors	3
tae03420	Nucleotide excision repair	3
tae04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01200	Carbon metabolism	2
hvu01230	Biosynthesis of amino acids	2
hvu00910	Nitrogen metabolism	2
hvu01310	Nitrogen cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00520	Amino sugar and nucleotide sugar metabolism	2
hvu01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03013	Nucleocytoplasmic transport	6
bna03015	mRNA surveillance pathway	6
bna03018	RNA degradation	3
bna03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03013	Nucleocytoplasmic transport	6
bna03015	mRNA surveillance pathway	6
bna03018	RNA degradation	3
bna03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	3
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00190	Oxidative phosphorylation	8
sbi03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00860	Porphyrin metabolism	2
sot01240	Biosynthesis of cofactors	2
sot04120	Ubiquitin mediated proteolysis	2
sot04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00564	Glycerophospholipid metabolism	2
cit00061	Fatty acid biosynthesis	2
cit01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04142	Lysosome	2
bdi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03083	Polycomb repressive complex	3
bdi04120	Ubiquitin mediated proteolysis	3
bdi04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00860	Porphyrin metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

5723844

5721603

821000

825262

100785452

100527880

100792939

101260867

4346041

4344151

4338688

100285195

100217144

100194012

103839330

103859703

103830278

100249334

100258533

7482311

7463071

7468133

11439119

25479429

123131411

123051776

123181892

123442312

123413566

121220368

107929632

107900782

106452592

106428999

106353253

8062426

8076854

8073128

102599138

102620671

102611693

104583737

100833988

100832111

107814617

107830529

The preparation time of this page was 0.4 [sec].


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	2	2	3	1	3	3	3	2	3	2	3	1	3	2	3	1	2	3	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_10g446300v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_10g446300v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**