ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cre-r.1	CHLRE_16g689647v5	uncharacterized protein
ath-u.5	AGO5	Argonaute family protein
ath-u.5	AGO10	Stabilizer of iron transporter SufD / Polynucleotidyl transferase
ath-u.5	AGO1	Stabilizer of iron transporter SufD / Polynucleotidyl transferase
gma-u.5	100819073	protein argonaute 10
gma-u.5	100816999	protein argonaute 10
gma-u.5	100813485	protein argonaute PNH1
sly-u.5	AGO10	protein argonaute 10
sly-u.5	101259671	protein argonaute 10
sly-u.5	AGO1B	Argonaute1B
osa-u.5	9270411	protein argonaute 1B-like
osa-u.5	9269490	protein argonaute PNH1-like
zma-u.5	103626484	protein argonaute 1D
zma-u.5	100193970	uncharacterized LOC100193970
zma-u.5	100304327	argonaute1c
bra-r.6	103829691	protein argonaute 5
bra-r.6	103833004	protein argonaute 1
bra-r.6	103827949	protein argonaute 10
vvi-u.5	100258447	protein argonaute 5
vvi-u.5	100268067	protein argonaute PNH1
vvi-u.5	100256320	protein argonaute 1
ppo-u.5	7472995	protein argonaute 5
ppo-u.5	7463340	protein argonaute 5
mtr-u.5	25497351	protein argonaute 1
mtr-u.5	11409042	protein argonaute PNH1
tae-r.2	123137655	protein argonaute 1A
hvu-r.1	123427487	protein argonaute 1B
ghi-r.1	107952160	protein argonaute 10
ghi-r.1	121220847	protein argonaute 5
ghi-r.1	121224458	protein argonaute 1
bna-r.1	106427533	protein argonaute 10
bna-r.1	106423767	protein argonaute 1
bna-r.1	106396342	protein argonaute 5
sbi-r.1	8056608	protein argonaute 1B
sot-r.1	102594078	protein argonaute 10-like
sot-r.1	102594657	protein argonaute 5-like
sot-r.1	102595869	protein argonaute 1
cit-r.1	102630366	protein argonaute 5
cit-r.1	102628378	protein argonaute 10
bdi-r.1	100830516	protein argonaute 1A
bdi-r.1	100829954	protein argonaute MEL1
nta-r.1	107771391	protein argonaute 1
nta-r.1	107782898	protein argonaute 10
nta-r.1	107789474	protein argonaute 1B-like

Top 50 coexpressed genes to CHLRE_16g689647v5 (cre-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CHLRE_16g689647v5 (cre-r.1 coexpression data)

CoexMap"5724406"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0035194 [list] [network] regulatory ncRNA-mediated post-transcriptional gene silencing

(5 genes)

IEA

GO CC

GO:0005737 [list] [network] cytoplasm

(2907 genes)

IEA

GO MF

GO:0003723 [list] [network] RNA binding	(670 genes)	IEA
GO:0005515 [list] [network] protein binding	(1927 genes)	IEA

Protein

XP_042916315.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 6, cyto 2, mito 1, cyto_nucl 1

(predict for XP_042916315.1)

Subcellular
localization
TargetP

other 9, mito 4

(predict for XP_042916315.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_16g689647v5	ath-u.5 for AGO5	ath-u.5 for AGO10	ath-u.5 for AGO1	gma-u.5 for 100819073	gma-u.5 for 100816999	gma-u.5 for 100813485	sly-u.5 for AGO10	sly-u.5 for 101259671	sly-u.5 for AGO1B	osa-u.5 for 9270411	osa-u.5 for 9269490	zma-u.5 for 103626484	zma-u.5 for 100193970	zma-u.5 for 100304327	bra-r.6 for 103829691	bra-r.6 for 103833004	bra-r.6 for 103827949	vvi-u.5 for 100258447	vvi-u.5 for 100268067	vvi-u.5 for 100256320	ppo-u.5 for 7472995	ppo-u.5 for 7463340	mtr-u.5 for 25497351	mtr-u.5 for 11409042	tae-r.2 for 123137655	hvu-r.1 for 123427487	ghi-r.1 for 107952160	ghi-r.1 for 121220847	ghi-r.1 for 121224458	bna-r.1 for 106427533	bna-r.1 for 106423767	bna-r.1 for 106396342	sbi-r.1 for 8056608	sot-r.1 for 102594078	sot-r.1 for 102594657	sot-r.1 for 102595869	cit-r.1 for 102630366	cit-r.1 for 102628378	bdi-r.1 for 100830516	bdi-r.1 for 100829954	nta-r.1 for 107771391	nta-r.1 for 107782898	nta-r.1 for 107789474

Ortholog

Ortholog ID: 261

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

CHLRE_16g689647v5

AGO5

AGO10

AGO1

AGO5

AGO5

Function^*

uncharacterized protein

Argonaute family protein

Stabilizer of iron transporter SufD / Polynucleotidyl transferase

protein argonaute PNH1

argonaute 5

argonaute 1

protein argonaute 10

protein argonaute 1A-like

Argonaute 5

protein argonaute 1A-like

protein argonaute 13-like

uncharacterized LOC100384259

uncharacterized LOC100384364

protein argonaute MEL1

protein argonaute 5

protein argonaute 1

protein argonaute PNH1

protein argonaute 1

protein argonaute 10

protein argonaute 1-like

protein argonaute 10

protein argonaute 1

protein argonaute 5

protein argonaute 10

protein argonaute MEL1

protein argonaute 1D

protein argonaute PNH1

protein argonaute 10

protein argonaute 1

protein argonaute 10

protein argonaute 1

protein argonaute 5-like

protein argonaute 1B

protein argonaute 10-like

protein argonaute 1

protein argonaute 1-like

protein argonaute MEL1-like

protein argonaute 5-like

protein argonaute 1

protein argonaute 1A

protein argonaute MEL1

protein argonaute 1B

protein argonaute 10

protein argonaute 1

protein argonaute PNH1-like

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03015	mRNA surveillance pathway	2
ath03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	4
ath03013	Nucleocytoplasmic transport	3
ath03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2
gma04141	Protein processing in endoplasmic reticulum	2
gma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03030	DNA replication	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03082	ATP-dependent chromatin remodeling	2
bra04136	Autophagy - other	2
bra04518	Integrin signaling	2
bra04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	3
ppo04142	Lysosome	2
ppo05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03013	Nucleocytoplasmic transport	4
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	3
mtr00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00904	Diterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00904	Diterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03013	Nucleocytoplasmic transport	3
sbi04120	Ubiquitin mediated proteolysis	3
sbi03015	mRNA surveillance pathway	2
sbi04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	3
sbi03015	mRNA surveillance pathway	3
sbi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00760	Nicotinate and nicotinamide metabolism	2
cit01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03082	ATP-dependent chromatin remodeling	2
bdi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	4
nta04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00430	Taurine and hypotaurine metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

5724406

817334

834403

841262

100808457

100799033

100778754

101259671

101247032

101244672

4330281

4334374

100384259

100384364

103625809

103829691

103833004

103868679

100268067

100256320

100244311

18105620

7498053

7454033

25497351

25492353

25485122

123113746

123149841

123413304

107952160

121224458

107929142

106427533

111215636

106352557

8056608

8065288

102594078

102595869

102582607

102630160

102630678

102616587

100830516

100829954

100826932

107801972

107806342

107829827

The preparation time of this page was 0.2 [sec].


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	3	3	3	2	3	3	3	2	2	1	1	3	3	1	3	2	2	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_16g689647v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_16g689647v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**