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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_16g684715v5   uncharacterized protein 
 ath-u.5   RTL2   RNAse THREE-like protein 2 
 ath-u.5   RTL3   RNAse THREE-like protein 3 
 gma-u.5   100802288   ribonuclease 3-like protein 2 
 sly-u.5   101253789   ribonuclease 3-like protein 3 
 sly-u.5   109120336   ribonuclease 3-like protein 3 
 sly-u.5   101267583   ribonuclease 3-like protein 2 
 osa-u.5   4340996   ribonuclease 3-like protein 3 
 osa-u.5   4338262   ribonuclease 3-like protein 2 
 osa-u.5   4325844   ribonuclease 3-like protein 1 
 zma-u.5   100273842   uncharacterized LOC100273842 
 zma-u.5   100272891   Ribonuclease 3-like protein 2 
 bra-r.6   103869324   ribonuclease 3-like protein 2 
 bra-r.6   103860778   ribonuclease 3-like protein 3 
 vvi-u.5   100260185   ribonuclease 3-like protein 3 
 vvi-u.5   100243580   ribonuclease 3-like protein 2 
 ppo-u.5   7489887   ribonuclease 3-like protein 3 
 ppo-u.5   7483612   ribonuclease 3-like protein 2 
 mtr-u.5   11432696   ribonuclease 3-like protein 3 
 mtr-u.5   11427553   endoribonuclease Dicer homolog 1 
 mtr-u.5   11435654   ribonuclease 3-like protein 2 
 tae-r.2   123149517   ribonuclease 3-like protein 2 
 tae-r.2   123169825   ribonuclease 3-like protein 2 
 hvu-r.1   123410029   ribonuclease 3-like protein 2 
 hvu-r.1   123408939   ribonuclease 3-like protein 3 
 ghi-r.1   107956815   ribonuclease 3-like protein 3 
 ghi-r.1   107903464   ribonuclease 3-like protein 2 
 ghi-r.1   107956909   ribonuclease 3-like protein 3 
 bna-r.1   106440046   ribonuclease 3-like protein 3 
 sbi-r.1   8071008   ribonuclease 3-like protein 3 
 sbi-r.1   8061288   ribonuclease 3-like protein 2 
 sot-r.1   102599964   ribonuclease 3-like protein 3 
 sot-r.1   102599637   ribonuclease 3-like protein 3 
 sot-r.1   102598686   ribonuclease 3-like protein 3 
 cit-r.1   102617758   ribonuclease 3-like protein 2 
 bdi-r.1   100828651   ribonuclease 3-like protein 3 
 bdi-r.1   100825810   ribonuclease 3-like protein 2 
 bdi-r.1   100845957   ribonuclease 3-like protein 2 
 nta-r.1   107773058   ribonuclease 3-like protein 2 
 nta-r.1   107769963   ribonuclease 3-like protein 2 
 nta-r.1   107771465   ribonuclease 3-like protein 3 

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Top 50 coexpressed genes to CHLRE_16g684715v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_16g684715v5 (cre-r.1 coexpression data)

CoexMap"5724419"


creCHLRE_16g684715v5 | Entrez gene ID : 5724419      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 2 1 3 3 2 2 2 2 3 2 2 3 1 2 3 1 3 3
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0030422 [list] [network] siRNA processing  (4 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (2907 genes)  IEA  
GO MF
GO:0004525 [list] [network] ribonuclease III activity  (5 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1223 genes)  IEA  
Protein XP_042916270.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  cyto 1,  nucl 1,  golg 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_042916270.1)
Subcellular
localization
TargetP
other 3,  mito 3  (predict for XP_042916270.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_16g684715v5
ath-u.5
for
RTL2
ath-u.5
for
RTL3
gma-u.5
for
100802288
sly-u.5
for
101253789
sly-u.5
for
109120336
sly-u.5
for
101267583
osa-u.5
for
4340996
osa-u.5
for
4338262
osa-u.5
for
4325844
zma-u.5
for
100273842
zma-u.5
for
100272891
bra-r.6
for
103869324
bra-r.6
for
103860778
vvi-u.5
for
100260185
vvi-u.5
for
100243580
ppo-u.5
for
7489887
ppo-u.5
for
7483612
mtr-u.5
for
11432696
mtr-u.5
for
11427553
mtr-u.5
for
11435654
tae-r.2
for
123149517
tae-r.2
for
123169825
hvu-r.1
for
123410029
hvu-r.1
for
123408939
ghi-r.1
for
107956815
ghi-r.1
for
107903464
ghi-r.1
for
107956909
bna-r.1
for
106440046
sbi-r.1
for
8071008
sbi-r.1
for
8061288
sot-r.1
for
102599964
sot-r.1
for
102599637
sot-r.1
for
102598686
cit-r.1
for
102617758
bdi-r.1
for
100828651
bdi-r.1
for
100825810
bdi-r.1
for
100845957
nta-r.1
for
107773058
nta-r.1
for
107769963
nta-r.1
for
107771465


Ortholog ID: 1271
Species cre ath ath gma sly sly osa osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae hvu hvu ghi ghi ghi bna bna sbi sbi sot sot cit bdi bdi bdi nta nta
Symbol CHLRE_16g684715v5 RTL2 RTL3 LOC100802288 LOC109120336 LOC101248023 LOC4340996 LOC4338262 LOC4325844 LOC100273842 LOC100272891 LOC103869324 LOC103860778 LOC100260185 LOC100243580 LOC7489887 LOC7483612 LOC25501225 LOC11421270 LOC123151369 LOC123410029 LOC123408939 LOC107956815 LOC107932710 LOC107923062 LOC106440046 LOC106434363 LOC8071008 LOC8061288 LOC102599964 LOC102598686 LOC102617758 LOC100828651 LOC100825810 LOC100845957 LOC107771465 LOC107801936
Function* uncharacterized protein RNAse THREE-like protein 2 RNAse THREE-like protein 3 ribonuclease 3-like protein 2 ribonuclease 3-like protein 3 ribonuclease 3-like protein 3 ribonuclease 3-like protein 3 ribonuclease 3-like protein 2 ribonuclease 3-like protein 1 uncharacterized LOC100273842 Ribonuclease 3-like protein 2 ribonuclease 3-like protein 2 ribonuclease 3-like protein 3 ribonuclease 3-like protein 3 ribonuclease 3-like protein 2 ribonuclease 3-like protein 3 ribonuclease 3-like protein 2 ribonuclease 3-like protein 2 ribonuclease 3-like protein 2 ribonuclease 3-like protein 3 ribonuclease 3-like protein 2 ribonuclease 3-like protein 3 ribonuclease 3-like protein 3 ribonuclease 3-like protein 2 ribonuclease 3-like protein 3 ribonuclease 3-like protein 3 ribonuclease 3-like protein 3 ribonuclease 3-like protein 3 ribonuclease 3-like protein 2 ribonuclease 3-like protein 3 ribonuclease 3-like protein 3 ribonuclease 3-like protein 2 ribonuclease 3-like protein 3 ribonuclease 3-like protein 2 ribonuclease 3-like protein 2 ribonuclease 3-like protein 3 ribonuclease 3-like protein 3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
gma03050 Proteasome 2
gma03272 Virion - Hepatitis viruses 2
gma00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03440 Homologous recombination 2
osa03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 2
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00230 Purine metabolism 2
bra04142 Lysosome 2
bra00460 Cyanoamino acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00020 Citrate cycle (TCA cycle) 3
ppo00620 Pyruvate metabolism 3
ppo01200 Carbon metabolism 3
ppo01240 Biosynthesis of cofactors 3
ppo00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 5
mtr03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00280 Valine, leucine and isoleucine degradation 2
mtr03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03060 Protein export 2
hvu04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04145 Phagosome 2
hvu01200 Carbon metabolism 2
hvu01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 3
ghi00052 Galactose metabolism 2
ghi00940 Phenylpropanoid biosynthesis 2
ghi00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00460 Cyanoamino acid metabolism 2
bna00500 Starch and sucrose metabolism 2
bna00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00520 Amino sugar and nucleotide sugar metabolism 3
bna04626 Plant-pathogen interaction 2
bna00460 Cyanoamino acid metabolism 2
bna00500 Starch and sucrose metabolism 2
bna00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00730 Thiamine metabolism 2
nta00900 Terpenoid backbone biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5724419 821587 834551 100802288 109120336 101248023 4340996 4338262 4325844 100273842 100272891 103869324 103860778 100260185 100243580 7489887 7483612 25501225 11421270 123151369 123410029 123408939 107956815 107932710 107923062 106440046 106434363 8071008 8061288 102599964 102598686 102617758 100828651 100825810 100845957 107771465 107801936
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