ATTED-II : GeneCoexpression result

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cre-r.1	CHLRE_14g614400v5	uncharacterized protein
ath-u.5	AT5G05130	DNA/RNA helicase protein
gma-u.5	100791783	putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1
sly-u.5	101248847	putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1
osa-u.5	4344076	putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1
zma-u.5	103633493	putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1
bra-r.6	103846868	putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1
vvi-u.5	100263696	putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1
ppo-u.5	7479660	putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1
mtr-u.5	11408938	putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1
tae-r.2	123187767	putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1
tae-r.2	123051886	putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1
tae-r.2	123044008	putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1
hvu-r.1	123425059	putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1
ghi-r.1	107950338	putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1
ghi-r.1	107935540	putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1
bna-r.1	106418987	putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1
bna-r.1	106440659	putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1
sbi-r.1	8066526	putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1
sot-r.1	102598495	putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1
cit-r.1	102608925	putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1
bdi-r.1	100842603	putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1
nta-r.1	107808643	putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1
nta-r.1	107787532	putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0140658 [list] [network] ATP-dependent chromatin remodeler activity	(31 genes)	IEA
GO:0008270 [list] [network] zinc ion binding	(213 genes)	IEA
GO:0016818 [list] [network] hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	(432 genes)	IEA
GO:0005524 [list] [network] ATP binding	(1223 genes)	IEA
GO:0003676 [list] [network] nucleic acid binding	(1484 genes)	IEA

Protein

XP_042916732.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, cyto 4, cyto_nucl 4

(predict for XP_042916732.1)

Subcellular
localization
TargetP

other 8, mito 3

(predict for XP_042916732.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_14g614400v5	ath-u.5 for AT5G05130	gma-u.5 for 100791783	sly-u.5 for 101248847	osa-u.5 for 4344076	zma-u.5 for 103633493	bra-r.6 for 103846868	vvi-u.5 for 100263696	ppo-u.5 for 7479660	mtr-u.5 for 11408938	tae-r.2 for 123187767	tae-r.2 for 123051886	tae-r.2 for 123044008	hvu-r.1 for 123425059	ghi-r.1 for 107950338	ghi-r.1 for 107935540	bna-r.1 for 106418987	bna-r.1 for 106440659	sbi-r.1 for 8066526	sot-r.1 for 102598495	cit-r.1 for 102608925	bdi-r.1 for 100842603	nta-r.1 for 107808643	nta-r.1 for 107787532

Ortholog

Ortholog ID: 10916

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

Function^*

uncharacterized protein

DNA/RNA helicase protein

putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04120	Ubiquitin mediated proteolysis	3
ath04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03030	DNA replication	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	5
osa03030	DNA replication	3
osa03410	Base excision repair	3
osa03420	Nucleotide excision repair	3
osa03430	Mismatch repair	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00196	Photosynthesis - antenna proteins	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	3
mtr04814	Motor proteins	2
mtr03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03020	RNA polymerase	5
tae03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04016	MAPK signaling pathway - plant	6
ghi04075	Plant hormone signal transduction	6
ghi00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04016	MAPK signaling pathway - plant	6
ghi04075	Plant hormone signal transduction	6
ghi00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03015	mRNA surveillance pathway	2
cit04144	Endocytosis	2
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	2
bdi00230	Purine metabolism	2
bdi00240	Pyrimidine metabolism	2
bdi00480	Glutathione metabolism	2
bdi01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	4
nta04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03250	Viral life cycle - HIV-1	2
nta03272	Virion - Hepatitis viruses	2
nta04144	Endocytosis	2
nta04626	Plant-pathogen interaction	2
nta04146	Peroxisome	2

Expression

Expression pattern

Entrez Gene ID^*

5724550

830395

100791783

101248847

4344076

103633493

103846868

100263696

7479660

11408938

123187767

123051886

123044008

123425059

107950338

107935540

106418987

106440659

8066526

102598495

102608925

100842603

107808643

107787532

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to CHLRE_14g614400v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_14g614400v5 (cre-r.1 coexpression data)


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	1	1	1	1	1	1	1	1	1	3	1	2	2	1	1	1	1	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_14g614400v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_14g614400v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**