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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_03g199535v5   uncharacterized protein 
 ath-u.5   LIL3:1   Chlorophyll A-B binding family protein 
 ath-u.5   LIL3:2   Chlorophyll A-B binding family protein 
 gma-u.5   100789538   light-harvesting complex-like protein 3 isotype 2, chloroplastic 
 gma-u.5   100780555   light-harvesting complex-like protein 3 isotype 2, chloroplastic 
 sly-u.5   101260362   light-harvesting complex-like protein 3 isotype 1, chloroplastic 
 sly-u.5   101248227   light-harvesting complex-like protein 3 isotype 2, chloroplastic 
 osa-u.5   4328151   light-harvesting complex-like protein 3 isotype 2, chloroplastic 
 zma-u.5   100285503   lil3 protein 
 zma-u.5   103654948   light-harvesting complex-like protein 3 isotype 2, chloroplastic 
 bra-r.6   103860922   light-harvesting complex-like protein 3 isotype 1, chloroplastic 
 bra-r.6   103839547   light-harvesting complex-like protein 3 isotype 2, chloroplastic 
 bra-r.6   103827669   light-harvesting complex-like protein 3 isotype 2, chloroplastic 
 vvi-u.5   100855146   light-harvesting complex-like protein 3 isotype 1, chloroplastic 
 ppo-u.5   18096893   light-harvesting complex-like protein 3 isotype 1, chloroplastic 
 ppo-u.5   18094557   light-harvesting complex-like protein 3 isotype 1, chloroplastic 
 mtr-u.5   25493593   light-harvesting complex-like protein 3 isotype 2, chloroplastic 
 tae-r.2   123131976   light-harvesting complex-like protein 3 isotype 2, chloroplastic 
 tae-r.2   123136015   light-harvesting complex-like protein 3 isotype 1, chloroplastic 
 tae-r.2   123143499   light-harvesting complex-like protein 3 isotype 1, chloroplastic 
 hvu-r.1   123406355   light-harvesting complex-like protein 3 isotype 2, chloroplastic 
 ghi-r.1   107946697   light-harvesting complex-like protein 3 isotype 2, chloroplastic 
 ghi-r.1   107886415   light-harvesting complex-like protein 3 isotype 2, chloroplastic 
 ghi-r.1   107920438   light-harvesting complex-like protein 3 isotype 2, chloroplastic 
 bna-r.1   125599560   light-harvesting complex-like protein 3 isotype 2, chloroplastic 
 bna-r.1   106444400   light-harvesting complex-like protein 3 isotype 1, chloroplastic 
 bna-r.1   106430029   light-harvesting complex-like protein 3 isotype 2, chloroplastic 
 sbi-r.1   8055071   light-harvesting complex-like protein 3 isotype 1, chloroplastic 
 sot-r.1   102592644   uncharacterized LOC102592644 
 sot-r.1   102591394   uncharacterized LOC102591394 
 cit-r.1   102626987   light-harvesting complex-like protein 3 isotype 1, chloroplastic 
 bdi-r.1   100830126   light-harvesting complex-like protein 3 isotype 2, chloroplastic 
 nta-r.1   107803372   light-harvesting complex-like protein 3 isotype 2, chloroplastic 
 nta-r.1   107782408   light-harvesting complex-like protein 3 isotype 1, chloroplastic 
 nta-r.1   107767653   light-harvesting complex-like protein 3 isotype 2, chloroplastic 

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Top 50 coexpressed genes to CHLRE_03g199535v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_03g199535v5 (cre-r.1 coexpression data)

CoexMap"5724971"


creCHLRE_03g199535v5 | Entrez gene ID : 5724971      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 2 2 2 1 2 3 1 2 1 3 1 3 3 1 2 1 1 3
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
Protein XP_001699421.2 [sequence] [blastp]
Subcellular
localization
wolf
mito 6,  chlo 4  (predict for XP_001699421.2)
Subcellular
localization
TargetP
chlo 6,  mito 5  (predict for XP_001699421.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_03g199535v5
ath-u.5
for
LIL3:1
ath-u.5
for
LIL3:2
gma-u.5
for
100789538
gma-u.5
for
100780555
sly-u.5
for
101260362
sly-u.5
for
101248227
osa-u.5
for
4328151
zma-u.5
for
100285503
zma-u.5
for
103654948
bra-r.6
for
103860922
bra-r.6
for
103839547
bra-r.6
for
103827669
vvi-u.5
for
100855146
ppo-u.5
for
18096893
ppo-u.5
for
18094557
mtr-u.5
for
25493593
tae-r.2
for
123131976
tae-r.2
for
123136015
tae-r.2
for
123143499
hvu-r.1
for
123406355
ghi-r.1
for
107946697
ghi-r.1
for
107886415
ghi-r.1
for
107920438
bna-r.1
for
125599560
bna-r.1
for
106444400
bna-r.1
for
106430029
sbi-r.1
for
8055071
sot-r.1
for
102592644
sot-r.1
for
102591394
cit-r.1
for
102626987
bdi-r.1
for
100830126
nta-r.1
for
107803372
nta-r.1
for
107782408
nta-r.1
for
107767653


Ortholog ID: 4413
Species cre ath ath gma gma sly sly osa zma zma bra bra bra vvi ppo ppo mtr tae tae tae hvu ghi ghi ghi bna bna bna sbi sot sot cit bdi nta nta nta
Symbol CHLRE_03g199535v5 LIL3:1 LIL3:2 LOC100789538 LOC100780555 LOC101260362 LOC101248227 LOC4328151 LOC100285503 LOC103654948 LOC103860922 LOC103839547 LOC103827669 LOC100855146 LOC18096893 LOC18094557 LOC25493593 LOC123131976 LOC123136015 LOC123143499 LOC123406355 LOC107886415 LOC107920438 LOC107939888 BNAC02G33160D LOC106401567 BNAC07G19940D LOC8055071 LOC102592644 LOC102591394 LOC102626987 LOC100830126 LOC107782408 LOC107767653 LOC107793178
Function* uncharacterized protein Chlorophyll A-B binding family protein Chlorophyll A-B binding family protein light-harvesting complex-like protein 3 isotype 2, chloroplastic light-harvesting complex-like protein 3 isotype 2, chloroplastic light-harvesting complex-like protein 3 isotype 1, chloroplastic light-harvesting complex-like protein 3 isotype 2, chloroplastic light-harvesting complex-like protein 3 isotype 2, chloroplastic lil3 protein light-harvesting complex-like protein 3 isotype 2, chloroplastic light-harvesting complex-like protein 3 isotype 1, chloroplastic light-harvesting complex-like protein 3 isotype 2, chloroplastic light-harvesting complex-like protein 3 isotype 2, chloroplastic light-harvesting complex-like protein 3 isotype 1, chloroplastic light-harvesting complex-like protein 3 isotype 1, chloroplastic light-harvesting complex-like protein 3 isotype 1, chloroplastic light-harvesting complex-like protein 3 isotype 2, chloroplastic light-harvesting complex-like protein 3 isotype 2, chloroplastic light-harvesting complex-like protein 3 isotype 1, chloroplastic light-harvesting complex-like protein 3 isotype 1, chloroplastic light-harvesting complex-like protein 3 isotype 2, chloroplastic light-harvesting complex-like protein 3 isotype 2, chloroplastic light-harvesting complex-like protein 3 isotype 2, chloroplastic light-harvesting complex-like protein 3 isotype 2, chloroplastic light-harvesting complex-like protein 3 isotype 2, chloroplastic light-harvesting complex-like protein 3 isotype 2, chloroplastic light-harvesting complex-like protein 3 isotype 2, chloroplastic light-harvesting complex-like protein 3 isotype 1, chloroplastic uncharacterized LOC102592644 uncharacterized LOC102591394 light-harvesting complex-like protein 3 isotype 1, chloroplastic light-harvesting complex-like protein 3 isotype 2, chloroplastic light-harvesting complex-like protein 3 isotype 1, chloroplastic light-harvesting complex-like protein 3 isotype 2, chloroplastic light-harvesting complex-like protein 3 isotype 2, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00860 Porphyrin metabolism 11
cre01240 Biosynthesis of cofactors 5
cre00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 7
ath00860 Porphyrin metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00860 Porphyrin metabolism 4
ath00196 Photosynthesis - antenna proteins 3
ath00710 Carbon fixation by Calvin cycle 3
ath01200 Carbon metabolism 3
ath00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01240 Biosynthesis of cofactors 3
gma00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01240 Biosynthesis of cofactors 3
gma00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 6
sly04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 5
sly00630 Glyoxylate and dicarboxylate metabolism 4
sly00260 Glycine, serine and threonine metabolism 2
sly00710 Carbon fixation by Calvin cycle 2
sly00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00860 Porphyrin metabolism 7
osa01240 Biosynthesis of cofactors 6
osa00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
osa01200 Carbon metabolism 2
osa00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 3
bra00860 Porphyrin metabolism 3
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra00710 Carbon fixation by Calvin cycle 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00860 Porphyrin metabolism 3
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00290 Valine, leucine and isoleucine biosynthesis 2
ppo00660 C5-Branched dibasic acid metabolism 2
ppo01210 2-Oxocarboxylic acid metabolism 2
ppo01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 5
mtr00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00053 Ascorbate and aldarate metabolism 3
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00970 Aminoacyl-tRNA biosynthesis 2
hvu00860 Porphyrin metabolism 2
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 3
bna00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00860 Porphyrin metabolism 5
sbi01240 Biosynthesis of cofactors 4
sbi00350 Tyrosine metabolism 2
sbi00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 10
bdi00860 Porphyrin metabolism 3
bdi01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01240 Biosynthesis of cofactors 3
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
nta01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5724971 827479 834757 100789538 100780555 101260362 101248227 4328151 100285503 103654948 103860922 103839547 103827669 100855146 18096893 18094557 25493593 123131976 123136015 123143499 123406355 107886415 107920438 107939888 106381878 106401567 106410809 8055071 102592644 102591394 102626987 100830126 107782408 107767653 107793178
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