ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cre-r.1	CHLRE_02g102600v5	uncharacterized protein
ath-u.5	AT3G06330	RING/U-box superfamily protein
ath-u.5	AT3G09760	RING/U-box superfamily protein
ath-u.5	AT5G03180	RING/U-box superfamily protein
gma-u.5	100779396	E3 ubiquitin-protein ligase MARCHF7
gma-u.5	100811800	uncharacterized LOC100811800
gma-u.5	100527094	uncharacterized LOC100527094
sly-u.5	101249383	uncharacterized LOC101249383
sly-u.5	101256453	uncharacterized LOC101256453
sly-u.5	101264251	uncharacterized LOC101264251
osa-u.5	4341836	uncharacterized LOC4341836
osa-u.5	4328407	uncharacterized LOC4328407
osa-u.5	9266525	uncharacterized LOC9266525
zma-u.5	100281740	protein binding protein
zma-u.5	100304255	RING/U-box superfamily protein
zma-u.5	103627315	RING/U-box superfamily protein
bra-r.6	103845473	uncharacterized LOC103845473
bra-r.6	108870098	probable E3 ubiquitin-protein ligase MARCH10
bra-r.6	103870523	uncharacterized LOC103870523
vvi-u.5	100243829	uncharacterized LOC100243829
vvi-u.5	100265508	uncharacterized LOC100265508
vvi-u.5	100259554	uncharacterized LOC100259554
ppo-u.5	18101707	uncharacterized LOC18101707
ppo-u.5	18100205	uncharacterized LOC18100205
ppo-u.5	18102274	uncharacterized LOC18102274
mtr-u.5	11446862	uncharacterized LOC11446862
mtr-u.5	11407485	E3 ubiquitin-protein ligase MARCHF7
tae-r.2	123142905	uncharacterized LOC123142905
tae-r.2	123187074	uncharacterized LOC123187074
tae-r.2	123145033	uncharacterized LOC123145033
hvu-r.1	123424414	uncharacterized LOC123424414
hvu-r.1	123409809	uncharacterized LOC123409809
hvu-r.1	123403931	uncharacterized LOC123403931
ghi-r.1	107963868	probable E3 ubiquitin-protein ligase MARCHF10
ghi-r.1	107944690	uncharacterized LOC107944690
ghi-r.1	107959039	E3 ubiquitin-protein ligase MARCHF7
bna-r.1	BNAC02G08320D	uncharacterized BNAC02G08320D
bna-r.1	111215774	probable E3 ubiquitin-protein ligase MARCHF10
sbi-r.1	8061609	uncharacterized LOC8061609
sbi-r.1	8066464	uncharacterized LOC8066464
sbi-r.1	8056949	uncharacterized LOC8056949
sot-r.1	102596732	uncharacterized LOC102596732
sot-r.1	102578157	uncharacterized LOC102578157
sot-r.1	102592492	uncharacterized LOC102592492
cit-r.1	102629301	uncharacterized LOC102629301
cit-r.1	102628742	hypothetical protein
cit-r.1	102606695	uncharacterized LOC102606695
bdi-r.1	100839069	uncharacterized LOC100839069
bdi-r.1	100829821	ferredoxin-thioredoxin reductase catalytic chain, chloroplastic
bdi-r.1	100836924	uncharacterized LOC100836924
nta-r.1	107785924	uncharacterized LOC107785924
nta-r.1	107778950	uncharacterized LOC107778950
nta-r.1	107799942	uncharacterized LOC107799942

Top 50 coexpressed genes to CHLRE_02g102600v5 (cre-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CHLRE_02g102600v5 (cre-r.1 coexpression data)

CoexMap"5725554"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0008270 [list] [network] zinc ion binding

(213 genes)

IEA

Protein

XP_042927378.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10

(predict for XP_042927378.1)

Subcellular
localization
TargetP

other 5

(predict for XP_042927378.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_02g102600v5	ath-u.5 for AT3G06330	ath-u.5 for AT3G09760	ath-u.5 for AT5G03180	gma-u.5 for 100779396	gma-u.5 for 100811800	gma-u.5 for 100527094	sly-u.5 for 101249383	sly-u.5 for 101256453	sly-u.5 for 101264251	osa-u.5 for 4341836	osa-u.5 for 4328407	osa-u.5 for 9266525	zma-u.5 for 100281740	zma-u.5 for 100304255	zma-u.5 for 103627315	bra-r.6 for 103845473	bra-r.6 for 108870098	bra-r.6 for 103870523	vvi-u.5 for 100243829	vvi-u.5 for 100265508	vvi-u.5 for 100259554	ppo-u.5 for 18101707	ppo-u.5 for 18100205	ppo-u.5 for 18102274	mtr-u.5 for 11446862	mtr-u.5 for 11407485	tae-r.2 for 123142905	tae-r.2 for 123187074	tae-r.2 for 123145033	hvu-r.1 for 123424414	hvu-r.1 for 123409809	hvu-r.1 for 123403931	ghi-r.1 for 107963868	ghi-r.1 for 107944690	ghi-r.1 for 107959039	bna-r.1 for BNAC02G08320D	bna-r.1 for 111215774	sbi-r.1 for 8061609	sbi-r.1 for 8066464	sbi-r.1 for 8056949	sot-r.1 for 102596732	sot-r.1 for 102578157	sot-r.1 for 102592492	cit-r.1 for 102629301	cit-r.1 for 102628742	cit-r.1 for 102606695	bdi-r.1 for 100839069	bdi-r.1 for 100829821	bdi-r.1 for 100836924	nta-r.1 for 107785924	nta-r.1 for 107778950	nta-r.1 for 107799942

Ortholog

Ortholog ID: 514

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

Function^*

uncharacterized protein

RING/U-box superfamily protein

uncharacterized LOC100782610

E3 ubiquitin-protein ligase MARCHF11

uncharacterized LOC100798208

uncharacterized LOC101249383

uncharacterized LOC101256453

uncharacterized LOC101265737

uncharacterized LOC4341836

uncharacterized LOC9266525

uncharacterized LOC4334905

protein binding protein

RING/U-box superfamily protein

uncharacterized LOC103870523

uncharacterized LOC103849984

uncharacterized LOC100243829

uncharacterized LOC100265508

uncharacterized LOC100257089

uncharacterized LOC18102274

uncharacterized LOC7491134

uncharacterized LOC7455873

uncharacterized LOC11446862

E3 ubiquitin-protein ligase MARCHF7

E3 ubiquitin-protein ligase MARCHF8

uncharacterized LOC123167294

uncharacterized LOC123149080

uncharacterized LOC123424414

uncharacterized LOC123409809

uncharacterized LOC123403931

uncharacterized LOC107905294

uncharacterized LOC107888472

uncharacterized LOC107944465

uncharacterized BNAC02G03310D

uncharacterized LOC8061609

uncharacterized LOC8066464

uncharacterized LOC8056949

uncharacterized LOC102596732

uncharacterized LOC102592492

uncharacterized LOC102593861

hypothetical protein

uncharacterized LOC102606695

uncharacterized LOC102619257

uncharacterized LOC100839069

ferredoxin-thioredoxin reductase catalytic chain, chloroplastic

uncharacterized LOC100836924

uncharacterized LOC107778310

uncharacterized LOC107776383

uncharacterized LOC107783518

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03015	mRNA surveillance pathway	2
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00710	Carbon fixation by Calvin cycle	4
gma01200	Carbon metabolism	4
gma00941	Flavonoid biosynthesis	3
gma04712	Circadian rhythm - plant	3
gma00010	Glycolysis / Gluconeogenesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00900	Terpenoid backbone biosynthesis	2
gma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00062	Fatty acid elongation	4
sly04626	Plant-pathogen interaction	4
sly04081	Hormone signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00562	Inositol phosphate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00562	Inositol phosphate metabolism	3
zma04070	Phosphatidylinositol signaling system	3
zma04136	Autophagy - other	2
zma04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	2
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00330	Arginine and proline metabolism	3
vvi01200	Carbon metabolism	2
vvi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00230	Purine metabolism	4
tae00900	Terpenoid backbone biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00053	Ascorbate and aldarate metabolism	3
tae00480	Glutathione metabolism	3
tae00330	Arginine and proline metabolism	3
tae01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	3
hvu04144	Endocytosis	3
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03440	Homologous recombination	2
ghi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi01200	Carbon metabolism	6
ghi00260	Glycine, serine and threonine metabolism	4
ghi00460	Cyanoamino acid metabolism	4
ghi00630	Glyoxylate and dicarboxylate metabolism	4
ghi00670	One carbon pool by folate	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00904	Diterpenoid biosynthesis	2
bna04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00561	Glycerolipid metabolism	2
sbi00073	Cutin, suberine and wax biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00511	Other glycan degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00280	Valine, leucine and isoleucine degradation	2
bdi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01230	Biosynthesis of amino acids	3
bdi01200	Carbon metabolism	2
bdi01210	2-Oxocarboxylic acid metabolism	2
bdi00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04016	MAPK signaling pathway - plant	2
nta04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	2

Expression

Expression pattern

Entrez Gene ID^*

5725554

819807

831897

836179

100782610

100783117

100798208

101249383

101256453

101265737

4341836

9266525

4334905

100281740

100304255

103627315

103870523

103849984

100243829

100265508

100257089

18102274

7491134

7455873

11446862

11407485

11432594

123167294

123149080

123424414

123409809

123403931

107905294

107888472

107944465

106360582

8061609

8066464

8056949

102596732

102592492

102593861

102628742

102606695

102619257

100839069

100829821

100836924

107778310

107776383

107783518

The preparation time of this page was 0.2 [sec].


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	3	3	3	3	3	3	3	3	2	3	3	3	2	3	3	3	3	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_02g102600v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_02g102600v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**