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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_01g055200v5   uncharacterized protein 
 ath-u.5   GIF3   GRF1-interacting factor 3 
 ath-u.5   AN3   SSXT family protein 
 ath-u.5   GIF2   GRF1-interacting factor 2 
 gma-u.5   100812917   GRF1-interacting factor 1-like 
 gma-u.5   100809843   GRF1-interacting factor 1 
 sly-u.5   101253549   GRF1-interacting factor 1 
 sly-u.5   101246804   GRF1-interacting factor 2-like 
 sly-u.5   101267451   GRF1-interacting factor 3 
 osa-u.5   4334010   GRF1-interacting factor 1 
 osa-u.5   4350919   GRF1-interacting factor 2 
 osa-u.5   4352256   GRF1-interacting factor 3 
 zma-u.5   100101544   growth-regulating-factor-inteacting factor1 
 zma-u.5   100282896   SSXT protein 
 zma-u.5   100101546   uncharacterized LOC100101546 
 bra-r.6   103844629   GRF1-interacting factor 2 
 bra-r.6   103843775   GRF1-interacting factor 2 
 bra-r.6   103874584   GRF1-interacting factor 1 
 vvi-u.5   100262678   GRF1-interacting factor 3 
 vvi-u.5   100257141   GRF1-interacting factor 2 
 vvi-u.5   100244659   GRF1-interacting factor 1 
 ppo-u.5   7464311   GRF1-interacting factor 3 
 ppo-u.5   7487734   GRF1-interacting factor 3 
 ppo-u.5   7487688   GRF1-interacting factor 1 
 mtr-u.5   25499695   GRF1-interacting factor 1 
 mtr-u.5   11409518   GRF1-interacting factor 1 
 tae-r.2   123086022   GRF1-interacting factor 2 
 tae-r.2   123086967   GRF-interacting factor 1 
 tae-r.2   123092056   GRF1-interacting factor 3 
 hvu-r.1   123447684   GRF-interacting factor 1 
 hvu-r.1   123394951   GRF1-interacting factor 3-like 
 hvu-r.1   123448413   GRF1-interacting factor 2-like 
 ghi-r.1   107889316   GRF1-interacting factor 1 
 ghi-r.1   107893205   GRF1-interacting factor 1 
 ghi-r.1   107895071   GRF1-interacting factor 1 
 bna-r.1   111200860   GRF1-interacting factor 1-like 
 bna-r.1   106370890   GRF1-interacting factor 2 
 bna-r.1   111211538   GRF1-interacting factor 1-like 
 sbi-r.1   8059943   GRF1-interacting factor 1 
 sbi-r.1   8064085   GRF1-interacting factor 2 
 sbi-r.1   8068289   GRF1-interacting factor 2 
 sot-r.1   102600927   GRF1-interacting factor 1-like 
 sot-r.1   102597163   GRF1-interacting factor 3-like 
 sot-r.1   102593346   GRF1-interacting factor 1-like 
 cit-r.1   102625389   GRF1-interacting factor 1 
 cit-r.1   102616744   GRF1-interacting factor 3 
 bdi-r.1   100826476   GRF1-interacting factor 3 
 bdi-r.1   100835669   GRF1-interacting factor 2 
 bdi-r.1   100843824   GRF1-interacting factor 1 
 nta-r.1   107823077   GRF1-interacting factor 3 
 nta-r.1   107813143   GRF1-interacting factor 1-like 
 nta-r.1   107810026   GRF1-interacting factor 3 

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Top 50 coexpressed genes to CHLRE_01g055200v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_01g055200v5 (cre-r.1 coexpression data)

CoexMap"5725728"


creCHLRE_01g055200v5 | Entrez gene ID : 5725728      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 3 2 3 3 3 3 3 3 2 3 3 3 3 3 3 2 3 3
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (47 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0003713 [list] [network] transcription coactivator activity  (26 genes)  IEA  
Protein XP_001700227.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 7,  nucl 1,  cyto 1,  cyto_nucl 1  (predict for XP_001700227.1)
Subcellular
localization
TargetP
other 8  (predict for XP_001700227.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_01g055200v5
ath-u.5
for
GIF3
ath-u.5
for
AN3
ath-u.5
for
GIF2
gma-u.5
for
100812917
gma-u.5
for
100809843
sly-u.5
for
101253549
sly-u.5
for
101246804
sly-u.5
for
101267451
osa-u.5
for
4334010
osa-u.5
for
4350919
osa-u.5
for
4352256
zma-u.5
for
100101544
zma-u.5
for
100282896
zma-u.5
for
100101546
bra-r.6
for
103844629
bra-r.6
for
103843775
bra-r.6
for
103874584
vvi-u.5
for
100262678
vvi-u.5
for
100257141
vvi-u.5
for
100244659
ppo-u.5
for
7464311
ppo-u.5
for
7487734
ppo-u.5
for
7487688
mtr-u.5
for
25499695
mtr-u.5
for
11409518
tae-r.2
for
123086022
tae-r.2
for
123086967
tae-r.2
for
123092056
hvu-r.1
for
123447684
hvu-r.1
for
123394951
hvu-r.1
for
123448413
ghi-r.1
for
107889316
ghi-r.1
for
107893205
ghi-r.1
for
107895071
bna-r.1
for
111200860
bna-r.1
for
106370890
bna-r.1
for
111211538
sbi-r.1
for
8059943
sbi-r.1
for
8064085
sbi-r.1
for
8068289
sot-r.1
for
102600927
sot-r.1
for
102597163
sot-r.1
for
102593346
cit-r.1
for
102625389
cit-r.1
for
102616744
bdi-r.1
for
100826476
bdi-r.1
for
100835669
bdi-r.1
for
100843824
nta-r.1
for
107823077
nta-r.1
for
107813143
nta-r.1
for
107810026


Ortholog ID: 997
Species cre ath ath ath gma gma sly sly sly osa osa osa zma zma zma bra bra bra vvi vvi vvi ppo ppo ppo mtr mtr tae tae tae hvu hvu hvu ghi ghi ghi bna bna bna sbi sbi sbi sot sot sot cit cit bdi bdi bdi nta nta nta
Symbol CHLRE_01g055200v5 GIF3 AN3 GIF2 LOC100801134 LOC100794665 LOC101253549 LOC101246804 LOC101251372 LOC4334010 LOC4350919 LOC4352256 LOC100101544 LOC100282896 LOC100101545 LOC103844629 LOC103874584 LOC103854627 LOC100262678 LOC100257141 LOC100253609 LOC7464311 LOC18108068 LOC7486798 LOC25499695 LOC11409518 LOC123102766 LOC123091007 LOC123119911 LOC123447684 LOC123394951 LOC123448413 LOC107895071 LOC107950356 LOC107899170 LOC111211538 LOC106348849 LOC106367766 LOC8059943 LOC8064085 LOC8068289 LOC102597163 LOC102593346 LOC102582966 LOC102625389 LOC102616744 LOC100826476 LOC100835669 LOC100843824 LOC107813143 LOC107796505 LOC107776880
Function* uncharacterized protein GRF1-interacting factor 3 SSXT family protein GRF1-interacting factor 2 GRF1-interacting factor 1 GRF1-interacting factor 3 GRF1-interacting factor 1 GRF1-interacting factor 2-like GRF1-interacting factor 1-like GRF1-interacting factor 1 GRF1-interacting factor 2 GRF1-interacting factor 3 growth-regulating-factor-inteacting factor1 SSXT protein GRF-interacting factor 2-like GRF1-interacting factor 2 GRF1-interacting factor 1 GRF1-interacting factor 1 GRF1-interacting factor 3 GRF1-interacting factor 2 GRF1-interacting factor 1 GRF1-interacting factor 3 GRF1-interacting factor 1 GRF1-interacting factor 3 GRF1-interacting factor 1 GRF1-interacting factor 1 GRF1-interacting factor 3 GRF-interacting factor 1 GRF1-interacting factor 2 GRF-interacting factor 1 GRF1-interacting factor 3-like GRF1-interacting factor 2-like GRF1-interacting factor 1 GRF1-interacting factor 2 GRF1-interacting factor 1 GRF1-interacting factor 1-like GRF1-interacting factor 1 GRF1-interacting factor 1-like GRF1-interacting factor 1 GRF1-interacting factor 2 GRF1-interacting factor 2 GRF1-interacting factor 3-like GRF1-interacting factor 1-like GRF1-interacting factor 2-like GRF1-interacting factor 1 GRF1-interacting factor 3 GRF1-interacting factor 3 GRF1-interacting factor 2 GRF1-interacting factor 1 GRF1-interacting factor 1-like GRF1-interacting factor 1-like GRF1-interacting factor 3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 4
cre03410 Base excision repair 3
cre03420 Nucleotide excision repair 3
cre03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 3
ath04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 6
ath03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 6
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 2
zma03030 DNA replication 2
zma03420 Nucleotide excision repair 2
zma03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
vvi04144 Endocytosis 2
vvi04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00061 Fatty acid biosynthesis 5
ppo01212 Fatty acid metabolism 5
ppo00780 Biotin metabolism 4
ppo01240 Biosynthesis of cofactors 4
ppo00620 Pyruvate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 2
mtr02010 ABC transporters 2
mtr04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 5
tae03420 Nucleotide excision repair 5
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 3
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01240 Biosynthesis of cofactors 10
ghi00230 Purine metabolism 6
ghi00730 Thiamine metabolism 6
ghi01232 Nucleotide metabolism 6
ghi00010 Glycolysis / Gluconeogenesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 3
sot00620 Pyruvate metabolism 3
sot01200 Carbon metabolism 3
sot00020 Citrate cycle (TCA cycle) 2
sot00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 4
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 4
bdi03060 Protein export 3
bdi03040 Spliceosome 3
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00073 Cutin, suberine and wax biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5725728 827995 832968 839278 100801134 100794665 101253549 101246804 101251372 4334010 4350919 4352256 100101544 100282896 100101545 103844629 103874584 103854627 100262678 100257141 100253609 7464311 18108068 7486798 25499695 11409518 123102766 123091007 123119911 123447684 123394951 123448413 107895071 107950356 107899170 111211538 106348849 106367766 8059943 8064085 8068289 102597163 102593346 102582966 102625389 102616744 100826476 100835669 100843824 107813143 107796505 107776880
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