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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_17g716101v5   uncharacterized protein 
 ath-u.5   Pol{lambda}   DNA polymerase lambda (POLL) 
 gma-u.5   100820492   DNA polymerase lambda 
 sly-u.5   101264323   DNA polymerase lambda 
 osa-u.5   4340604   DNA polymerase lambda-like 
 zma-u.5   100383279   DNA polymerase lambda (POLL) 
 bra-r.6   103868089   DNA polymerase lambda 
 vvi-u.5   100248348   DNA polymerase lambda 
 ppo-u.5   7459057   DNA polymerase lambda 
 mtr-u.5   25498091   DNA polymerase lambda 
 tae-r.2   123156776   DNA polymerase lambda 
 tae-r.2   123148969   DNA polymerase lambda 
 hvu-r.1   123407010   DNA polymerase lambda 
 ghi-r.1   107948535   DNA polymerase lambda 
 ghi-r.1   107901984   DNA polymerase lambda 
 bna-r.1   106453095   DNA polymerase lambda 
 sbi-r.1   8057897   DNA polymerase lambda 
 sot-r.1   102604097   DNA polymerase beta 
 cit-r.1   102620577   DNA polymerase lambda 
 bdi-r.1   100827137   DNA polymerase lambda 
 nta-r.1   107817483   DNA polymerase lambda-like 
 nta-r.1   107793193   DNA polymerase lambda 

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Top 50 coexpressed genes to CHLRE_17g716101v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_17g716101v5 (cre-r.1 coexpression data)

CoexMap"5725938"


creCHLRE_17g716101v5 | Entrez gene ID : 5725938      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 2
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006303 [list] [network] double-strand break repair via nonhomologous end joining  (11 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0003887 [list] [network] DNA-directed DNA polymerase activity  (22 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (670 genes)  IEA  
Protein XP_042914617.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 2,  E.R. 2,  plas 1,  vacu 1,  chlo_mito 1,  cyto_E.R. 1  (predict for XP_042914617.1)
Subcellular
localization
TargetP
other 7  (predict for XP_042914617.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_17g716101v5
ath-u.5
for
Pol{lambda}
gma-u.5
for
100820492
sly-u.5
for
101264323
osa-u.5
for
4340604
zma-u.5
for
100383279
bra-r.6
for
103868089
vvi-u.5
for
100248348
ppo-u.5
for
7459057
mtr-u.5
for
25498091
tae-r.2
for
123156776
tae-r.2
for
123148969
hvu-r.1
for
123407010
ghi-r.1
for
107948535
ghi-r.1
for
107901984
bna-r.1
for
106453095
sbi-r.1
for
8057897
sot-r.1
for
102604097
cit-r.1
for
102620577
bdi-r.1
for
100827137
nta-r.1
for
107817483
nta-r.1
for
107793193


Ortholog ID: 11041
Species cre ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna sbi sot cit bdi nta nta
Symbol CHLRE_17g716101v5 Pol{lambda} LOC100820492 LOC101264323 LOC4340604 LOC100383279 LOC103868089 LOC100248348 LOC7459057 LOC25498091 LOC123156776 LOC123148969 LOC123407010 LOC107948535 LOC107901984 LOC106453095 LOC8057897 LOC102604097 LOC102620577 LOC100827137 LOC107817483 LOC107793193
Function* uncharacterized protein DNA polymerase lambda (POLL) DNA polymerase lambda DNA polymerase lambda DNA polymerase lambda-like DNA polymerase lambda (POLL) DNA polymerase lambda DNA polymerase lambda DNA polymerase lambda DNA polymerase lambda DNA polymerase lambda DNA polymerase lambda DNA polymerase lambda DNA polymerase lambda DNA polymerase lambda DNA polymerase lambda DNA polymerase lambda DNA polymerase beta DNA polymerase lambda DNA polymerase lambda DNA polymerase lambda-like DNA polymerase lambda
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 4
ath03460 Fanconi anemia pathway 2
ath03410 Base excision repair 2
ath03430 Mismatch repair 2
ath03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 2
gma04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 2
sly03440 Homologous recombination 2
sly04141 Protein processing in endoplasmic reticulum 2
sly03410 Base excision repair 2
sly03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03440 Homologous recombination 2
osa03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 2
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 3
mtr03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03450 Non-homologous end-joining 5
tae03008 Ribosome biogenesis in eukaryotes 4
tae03430 Mismatch repair 4
tae03460 Fanconi anemia pathway 4
tae03410 Base excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03450 Non-homologous end-joining 3
tae03008 Ribosome biogenesis in eukaryotes 3
tae03410 Base excision repair 2
tae03430 Mismatch repair 2
tae03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00340 Histidine metabolism 3
ghi01230 Biosynthesis of amino acids 3
ghi03410 Base excision repair 2
ghi03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00340 Histidine metabolism 3
ghi01230 Biosynthesis of amino acids 3
ghi03410 Base excision repair 2
ghi03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00561 Glycerolipid metabolism 4
bna00564 Glycerophospholipid metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01240 Biosynthesis of cofactors 2
sot03410 Base excision repair 2
sot03450 Non-homologous end-joining 2
sot03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03410 Base excision repair 3
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 2
nta03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 2
nta03450 Non-homologous end-joining 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5725938 837592 100820492 101264323 4340604 100383279 103868089 100248348 7459057 25498091 123156776 123148969 123407010 107948535 107901984 106453095 8057897 102604097 102620577 100827137 107817483 107793193
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