ATTED-II : GeneCoexpression result

Species	Gene	Description
cre-r.1	CHLRE_12g492450v5	uncharacterized protein
cre-r.1	CHLRE_03g171650v5	uncharacterized protein
ath-u.5	AT2G35920	RNA helicase family protein
gma-u.5	100792823	DExH-box ATP-dependent RNA helicase DExH1
gma-u.5	100792623	DExH-box ATP-dependent RNA helicase DExH1
sly-u.5	101264453	DExH-box ATP-dependent RNA helicase DExH1
osa-u.5	4348871	DExH-box ATP-dependent RNA helicase DExH1
zma-u.5	103643471	DExH-box ATP-dependent RNA helicase DExH1
bra-r.6	103857598	DExH-box ATP-dependent RNA helicase DExH1
vvi-u.5	100252028	DExH-box ATP-dependent RNA helicase DExH1
ppo-u.5	7469944	DExH-box ATP-dependent RNA helicase DExH1
mtr-u.5	11424426	DExH-box ATP-dependent RNA helicase DExH1
tae-r.2	123045164	DExH-box ATP-dependent RNA helicase DExH1
tae-r.2	123120865	DExH-box ATP-dependent RNA helicase DExH1
tae-r.2	123181008	DExH-box ATP-dependent RNA helicase DExH1
hvu-r.1	123430684	DExH-box ATP-dependent RNA helicase DExH1
ghi-r.1	107948284	DExH-box ATP-dependent RNA helicase DExH1
ghi-r.1	107899406	DExH-box ATP-dependent RNA helicase DExH1
bna-r.1	106388140	DExH-box ATP-dependent RNA helicase DExH1
bna-r.1	125606449	DExH-box ATP-dependent RNA helicase DExH1-like
sbi-r.1	8070497	DExH-box ATP-dependent RNA helicase DExH1
sot-r.1	102584740	ATP-dependent RNA helicase DHX36
cit-r.1	102628348	DExH-box ATP-dependent RNA helicase DExH1
bdi-r.1	100834725	DExH-box ATP-dependent RNA helicase DExH1
nta-r.1	107787244	DExH-box ATP-dependent RNA helicase DExH1
nta-r.1	107798029	DExH-box ATP-dependent RNA helicase DExH1

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005622 [list] [network] intracellular anatomical structure

(4579 genes)

IEA

GO MF

GO:0003723 [list] [network] RNA binding

(670 genes)

IEA

Protein

XP_042917969.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, cyto 2, cysk_nucl 2, plas 1, cyto_pero 1, cyto_E.R. 1

(predict for XP_042917969.1)

Subcellular
localization
TargetP

other 8

(predict for XP_042917969.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_12g492450v5	cre-r.1 for CHLRE_03g171650v5	ath-u.5 for AT2G35920	gma-u.5 for 100792823	gma-u.5 for 100792623	sly-u.5 for 101264453	osa-u.5 for 4348871	zma-u.5 for 103643471	bra-r.6 for 103857598	vvi-u.5 for 100252028	ppo-u.5 for 7469944	mtr-u.5 for 11424426	tae-r.2 for 123045164	tae-r.2 for 123120865	tae-r.2 for 123181008	hvu-r.1 for 123430684	ghi-r.1 for 107948284	ghi-r.1 for 107899406	bna-r.1 for 106388140	bna-r.1 for 125606449	sbi-r.1 for 8070497	sot-r.1 for 102584740	cit-r.1 for 102628348	bdi-r.1 for 100834725	nta-r.1 for 107787244	nta-r.1 for 107798029

Ortholog

Ortholog ID: 8904

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

Function^*

uncharacterized protein

RNA helicase family protein

DExH-box ATP-dependent RNA helicase DExH1

DExH-box ATP-dependent RNA helicase DExH1-like

DExH-box ATP-dependent RNA helicase DExH1

ATP-dependent RNA helicase DHX36

DExH-box ATP-dependent RNA helicase DExH1

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03018	RNA degradation	3
gma04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	3
sly03015	mRNA surveillance pathway	3
sly03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	4
zma03018	RNA degradation	3
zma00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03013	Nucleocytoplasmic transport	7
bra03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03018	RNA degradation	2
vvi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03013	Nucleocytoplasmic transport	4
ppo03018	RNA degradation	3
ppo03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	3
tae03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	4
tae00310	Lysine degradation	3
tae03013	Nucleocytoplasmic transport	2
tae03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	5
tae03018	RNA degradation	4
tae03082	ATP-dependent chromatin remodeling	3
tae03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	10
ghi04626	Plant-pathogen interaction	6
ghi03013	Nucleocytoplasmic transport	4
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03013	Nucleocytoplasmic transport	8
ghi04075	Plant hormone signal transduction	8
ghi04626	Plant-pathogen interaction	4
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	13
bna03018	RNA degradation	2
bna03030	DNA replication	2
bna03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	13
bna03018	RNA degradation	2
bna03030	DNA replication	2
bna03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03013	Nucleocytoplasmic transport	3
sot03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	2

Expression

Expression pattern

Entrez Gene ID^*

5726131

5728925

818165

100792823

100792623

101264453

4348871

103643471

103857598

100252028

7469944

11424426

123045164

123120865

123181008

123430684

107948284

107899406

106388140

125606449

8070497

102584740

102628348

100834725

107787244

107798029

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to CHLRE_12g492450v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_12g492450v5 (cre-r.1 coexpression data)


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	2	1	2	1	1	1	1	1	1	1	3	1	2	2	1	1	1	1	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_12g492450v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_12g492450v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**