ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cre-r.1	CHLRE_05g234661v5	uncharacterized protein
cre-r.1	CHLRE_02g106450v5	uncharacterized protein
ath-u.5	AT5G17760	P-loop containing nucleoside triphosphate hydrolases superfamily protein
gma-u.5	100812263	AAA-ATPase At3g50940
gma-u.5	100789716	protein HYPER-SENSITIVITY-RELATED 4
gma-u.5	100789621	AAA-ATPase At3g50940
sly-u.5	101250191	protein HYPER-SENSITIVITY-RELATED 4-like
sly-u.5	101259707	AAA-ATPase At5g17760-like
osa-u.5	4324105	AAA-ATPase At3g50940
zma-u.5	100281434	mitochondrial chaperone BCS1
zma-u.5	100273892	uncharacterized LOC100273892
bra-r.6	103860682	protein HYPER-SENSITIVITY-RELATED 4
bra-r.6	103856260	AAA-ATPase At5g17760
vvi-u.5	100259595	AAA-ATPase At3g50940
vvi-u.5	100241723	AAA-ATPase At3g50940
ppo-u.5	7494779	AAA-ATPase At3g50940
mtr-u.5	11411859	AAA-ATPase At3g50940
mtr-u.5	11407775	AAA-ATPase At3g50940
mtr-u.5	11407773	AAA-ATPase At3g50940
hvu-r.1	123439946	AAA-ATPase At3g50940-like
ghi-r.1	107957597	AAA-ATPase At3g50940
ghi-r.1	107911065	AAA-ATPase At1g43910
ghi-r.1	107909417	AAA-ATPase At5g17760
bna-r.1	106452887	AAA-ATPase At5g17760-like
bna-r.1	106426198	AAA-ATPase At5g17760-like
sbi-r.1	8063668	AAA-ATPase At3g28600
sbi-r.1	8082216	AAA-ATPase At3g50940
sot-r.1	102583922	AAA-ATPase At3g50940-like
sot-r.1	102585539	AAA-ATPase At3g50940-like
sot-r.1	102591847	AAA-ATPase At2g18193-like
cit-r.1	102609517	AAA-ATPase At3g50940-like
cit-r.1	102609232	AAA-ATPase At3g50940-like
cit-r.1	102608458	protein HYPER-SENSITIVITY-RELATED 4-like
bdi-r.1	100824372	AAA-ATPase At3g50940
nta-r.1	107798299	AAA-ATPase At5g17760
nta-r.1	107795112	AAA-ATPase At3g50940-like
nta-r.1	107791011	AAA-ATPase At3g50940

Top 50 coexpressed genes to CHLRE_05g234661v5 (cre-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CHLRE_05g234661v5 (cre-r.1 coexpression data)

CoexMap"5726192"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0016887 [list] [network] ATP hydrolysis activity	(290 genes)	IEA
GO:0005524 [list] [network] ATP binding	(1223 genes)	IEA

Protein

XP_042924787.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, plas 2, mito 1, nucl_plas 1, cyto_plas 1

(predict for XP_042924787.1)

Subcellular
localization
TargetP

other 8

(predict for XP_042924787.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_05g234661v5	cre-r.1 for CHLRE_02g106450v5	ath-u.5 for AT5G17760	gma-u.5 for 100812263	gma-u.5 for 100789716	gma-u.5 for 100789621	sly-u.5 for 101250191	sly-u.5 for 101259707	osa-u.5 for 4324105	zma-u.5 for 100281434	zma-u.5 for 100273892	bra-r.6 for 103860682	bra-r.6 for 103856260	vvi-u.5 for 100259595	vvi-u.5 for 100241723	ppo-u.5 for 7494779	mtr-u.5 for 11411859	mtr-u.5 for 11407775	mtr-u.5 for 11407773	hvu-r.1 for 123439946	ghi-r.1 for 107957597	ghi-r.1 for 107911065	ghi-r.1 for 107909417	bna-r.1 for 106452887	bna-r.1 for 106426198	sbi-r.1 for 8063668	sbi-r.1 for 8082216	sot-r.1 for 102583922	sot-r.1 for 102585539	sot-r.1 for 102591847	cit-r.1 for 102609517	cit-r.1 for 102609232	cit-r.1 for 102608458	bdi-r.1 for 100824372	nta-r.1 for 107798299	nta-r.1 for 107795112	nta-r.1 for 107791011

Ortholog

Ortholog ID: 157

Species

cre

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

Function^*

uncharacterized protein

probable mitochondrial chaperone BCS1-B

AAA-ATPase At3g50940

AAA-ATPase At2g18193

protein HYPER-SENSITIVITY-RELATED 4-like

AAA-ATPase At3g50940-like

AAA-ATPase At3g50940

mitochondrial chaperone BCS1

mitochondrial protein

AAA-ATPase At5g17760

AAA-ATPase At2g18193

AAA-ATPase At3g50940

uncharacterized LOC100241950

AAA-ATPase At5g17760

AAA-ATPase At3g50940

AAA-ATPase At5g17760

AAA-ATPase At3g50940

AAA-ATPase At1g43910

AAA-ATPase At3g50940

protein HYPER-SENSITIVITY-RELATED 4

AAA-ATPase At5g17760

AAA-ATPase At5g17760-like

AAA-ATPase At3g50940

uncharacterized LOC8080130

AAA-ATPase At2g18193-like

protein HYPER-SENSITIVITY-RELATED 4-like

AAA-ATPase At3g50940-like

AAA-ATPase At3g50940

protein HYPER-SENSITIVITY-RELATED 4-like

AAA-ATPase At3g50940

AAA-ATPase At3g50940-like

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2
gma04141	Protein processing in endoplasmic reticulum	2
gma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01040	Biosynthesis of unsaturated fatty acids	4
sly01212	Fatty acid metabolism	4
sly00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00520	Amino sugar and nucleotide sugar metabolism	2
osa01250	Biosynthesis of nucleotide sugars	2
osa04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	4
bra04016	MAPK signaling pathway - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04016	MAPK signaling pathway - plant	2
bna04075	Plant hormone signal transduction	2
bna00790	Folate biosynthesis	2
bna01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04016	MAPK signaling pathway - plant	2
bna04075	Plant hormone signal transduction	2
bna00790	Folate biosynthesis	2
bna01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	5
sbi04141	Protein processing in endoplasmic reticulum	5
sbi04144	Endocytosis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	4
sbi04141	Protein processing in endoplasmic reticulum	4
sbi04144	Endocytosis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00400	Phenylalanine, tyrosine and tryptophan biosynthesis	3
bdi01230	Biosynthesis of amino acids	3
bdi00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00480	Glutathione metabolism	5
bdi01200	Carbon metabolism	4
bdi01230	Biosynthesis of amino acids	4
bdi00010	Glycolysis / Gluconeogenesis	3
bdi00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04712	Circadian rhythm - plant	2
bdi00100	Steroid biosynthesis	2
bdi00909	Sesquiterpenoid and triterpenoid biosynthesis	2

Expression

Expression pattern

Entrez Gene ID^*

5726192

66052449

100787726

100778503

100788270

101250191

101261461

4324105

4333339

4339775

100281434

100281676

103845903

103874084

100259595

100241950

7495497

7495496

18099250

11406855

120580616

11422577

123161367

123161357

107901206

107936550

106397457

106387745

125595180

8080132

8080130

102591847

102596396

102579261

102608161

102630983

100824372

100840525

100832286

107778321

The preparation time of this page was 0.3 [sec].


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	hvu	ghi	bna	sbi	sot	cit	bdi	nta	tae
Paralog	2	1	3	2	1	2	2	2	1	3	1	3	2	2	3	3	1	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_05g234661v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_05g234661v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**