ATTED-II : GeneCoexpression result

Species	Gene	Description
cre-r.1	CHLRE_07g319900v5	uncharacterized protein
ath-u.5	AT2G25355	PNAS-3-like protein
ath-u.5	AT4G32175	PNAS-3-like protein
gma-u.5	100809941	putative exosome complex component rrp40-like
gma-u.5	100791930	putative exosome complex component rrp40
sly-u.5	101262526	uncharacterized LOC101262526
osa-u.5	4324917	uncharacterized LOC4324917
osa-u.5	4327851	uncharacterized LOC4327851
zma-u.5	100282437	exosome complex exonuclease RRP40
zma-u.5	103651400	putative exosome complex component rrp40
bra-r.6	103834571	putative exosome complex component rrp40
vvi-u.5	100241656	uncharacterized LOC100241656
ppo-u.5	7458031	uncharacterized LOC7458031
mtr-u.5	11422163	putative exosome complex component rrp40
tae-r.2	123078722	putative exosome complex component rrp40
tae-r.2	123070275	putative exosome complex component rrp40
tae-r.2	123061649	putative exosome complex component rrp40
hvu-r.1	123444021	putative exosome complex component rrp40
ghi-r.1	107933413	putative exosome complex component rrp40
ghi-r.1	107887158	putative exosome complex component rrp40
bna-r.1	106390008	putative exosome complex component rrp40
bna-r.1	111199733	putative exosome complex component rrp40
sbi-r.1	8061812	putative exosome complex component rrp40
sot-r.1	102594990	putative exosome complex component rrp40
cit-r.1	102617858	uncharacterized LOC102617858
bdi-r.1	100843769	putative exosome complex component rrp40
nta-r.1	107811937	uncharacterized LOC107811937
nta-r.1	107780643	uncharacterized LOC107780643
nta-r.1	107766912	uncharacterized LOC107766912

Annotation

functional annotation

KEGG

cre03018 [list] [network] RNA degradation (48 genes)

GO BP

GO:0071034 [list] [network] CUT catabolic process	(4 genes)	IEA
GO:0071035 [list] [network] nuclear polyadenylation-dependent rRNA catabolic process	(7 genes)	IEA
GO:0071038 [list] [network] TRAMP-dependent tRNA surveillance pathway	(7 genes)	IEA
GO:0071051 [list] [network] poly(A)-dependent snoRNA 3'-end processing	(7 genes)	IEA
GO:0000467 [list] [network] exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	(8 genes)	IEA
GO:0034475 [list] [network] U4 snRNA 3'-end processing	(8 genes)	IEA

GO CC

GO:0000177 [list] [network] cytoplasmic exosome (RNase complex)	(9 genes)	IEA
GO:0000176 [list] [network] nuclear exosome (RNase complex)	(12 genes)	IEA

GO MF

GO:0003723 [list] [network] RNA binding

(670 genes)

IEA

Protein

XP_001701026.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 6, chlo 1, pero 1, nucl 1, mito 1

(predict for XP_001701026.1)

Subcellular
localization
TargetP

other 7

(predict for XP_001701026.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_07g319900v5	ath-u.5 for AT2G25355	ath-u.5 for AT4G32175	gma-u.5 for 100809941	gma-u.5 for 100791930	sly-u.5 for 101262526	osa-u.5 for 4324917	osa-u.5 for 4327851	zma-u.5 for 100282437	zma-u.5 for 103651400	bra-r.6 for 103834571	vvi-u.5 for 100241656	ppo-u.5 for 7458031	mtr-u.5 for 11422163	tae-r.2 for 123078722	tae-r.2 for 123070275	tae-r.2 for 123061649	hvu-r.1 for 123444021	ghi-r.1 for 107933413	ghi-r.1 for 107887158	bna-r.1 for 106390008	bna-r.1 for 111199733	sbi-r.1 for 8061812	sot-r.1 for 102594990	cit-r.1 for 102617858	bdi-r.1 for 100843769	nta-r.1 for 107811937	nta-r.1 for 107780643	nta-r.1 for 107766912

Ortholog

Ortholog ID: 7514

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

Function^*

uncharacterized protein

PNAS-3-like protein

putative exosome complex component rrp40-like

putative exosome complex component rrp40

uncharacterized LOC101262526

uncharacterized LOC4324917

uncharacterized LOC4327851

exosome complex exonuclease RRP40

putative exosome complex component rrp40

uncharacterized LOC100241656

uncharacterized LOC7458031

putative exosome complex component rrp40

uncharacterized LOC102617858

putative exosome complex component rrp40

uncharacterized LOC107811937

uncharacterized LOC107780643

uncharacterized LOC107766912

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03020	RNA polymerase	5
cre03008	Ribosome biogenesis in eukaryotes	3
cre03420	Nucleotide excision repair	3
cre03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03018	RNA degradation	4
ath03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	3
ath03008	Ribosome biogenesis in eukaryotes	3
ath03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03018	RNA degradation	3
gma03020	RNA polymerase	2
gma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03018	RNA degradation	3
gma03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	4
sly03010	Ribosome	2
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	7
osa03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04142	Lysosome	4
zma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	7
tae00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	5
tae00564	Glycerophospholipid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	5
hvu03010	Ribosome	2
hvu03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04626	Plant-pathogen interaction	2
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04626	Plant-pathogen interaction	2
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	6
bna03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	4
bna03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03083	Polycomb repressive complex	2
sbi03018	RNA degradation	2
sbi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot01230	Biosynthesis of amino acids	4
sot00260	Glycine, serine and threonine metabolism	2
sot00460	Cyanoamino acid metabolism	2
sot00630	Glyoxylate and dicarboxylate metabolism	2
sot00670	One carbon pool by folate	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00902	Monoterpenoid biosynthesis	3
cit03018	RNA degradation	2
cit00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	2
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	8
bdi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	3
nta03013	Nucleocytoplasmic transport	2

Expression

Expression pattern

Entrez Gene ID^*

5726388

817074

829350

100809941

100791930

101262526

4324917

4327851

100282437

103651400

103834571

100241656

7458031

11422163

123078722

123070275

123061649

123444021

107933413

107887158

106390008

111199733

8061812

102594990

102617858

100843769

107811937

107780643

107766912

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to CHLRE_07g319900v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_07g319900v5 (cre-r.1 coexpression data)


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	2	2	1	2	2	1	1	1	1	3	1	2	2	1	1	1	1	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_07g319900v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_07g319900v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**