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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_07g318702v5   uncharacterized protein 
 ath-u.5   AT4G28450   WD repeat and SOF domain-containing protein 1 
 gma-u.5   100812671   DDB1- and CUL4-associated factor 13 
 sly-u.5   101251902   uncharacterized LOC101251902 
 osa-u.5   4326362   uncharacterized LOC4326362 
 zma-u.5   100273845   protein SOF1 
 bra-r.6   103861832   DDB1- and CUL4-associated factor 13 
 vvi-u.5   100260774   uncharacterized LOC100260774 
 ppo-u.5   7459966   uncharacterized LOC7459966 
 ppo-u.5   18106796   uncharacterized LOC18106796 
 mtr-u.5   11414546   DDB1- and CUL4-associated factor 13 
 tae-r.2   123069430   DDB1- and CUL4-associated factor 13 
 tae-r.2   123077935   DDB1- and CUL4-associated factor 13 
 tae-r.2   123060847   DDB1- and CUL4-associated factor 13 
 hvu-r.1   123443297   DDB1- and CUL4-associated factor 13 
 ghi-r.1   107886796   DDB1- and CUL4-associated factor 13 
 ghi-r.1   107909268   DDB1- and CUL4-associated factor 13 
 bna-r.1   106440997   DDB1- and CUL4-associated factor 13 
 sbi-r.1   8061393   DDB1- and CUL4-associated factor 13 
 sbi-r.1   8077546   DDB1- and CUL4-associated factor 13 
 sot-r.1   102585720   DDB1- and CUL4-associated factor 13 
 cit-r.1   102621530   uncharacterized LOC102621530 
 bdi-r.1   100837448   DDB1- and CUL4-associated factor 13 
 nta-r.1   107820775   uncharacterized LOC107820775 
 nta-r.1   107809218   uncharacterized LOC107809218 

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Top 50 coexpressed genes to CHLRE_07g318702v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_07g318702v5 (cre-r.1 coexpression data)

CoexMap"5726563"


creCHLRE_07g318702v5 | Entrez gene ID : 5726563    
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 1 1 1 1 1 1 2 1 3 1 2 1 2 1 1 1 2
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000462 [list] [network] maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (29 genes)  IEA  
GO CC
GO:0032040 [list] [network] small-subunit processome  (35 genes)  IEA  
GO:0005730 [list] [network] nucleolus  (152 genes)  IEA  
GO MF
GO:0005515 [list] [network] protein binding  (1927 genes)  IEA  
Protein XP_042922501.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  nucl 2,  mito 2  (predict for XP_042922501.1)
Subcellular
localization
TargetP
other 7  (predict for XP_042922501.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_07g318702v5
ath-u.5
for
AT4G28450
gma-u.5
for
100812671
sly-u.5
for
101251902
osa-u.5
for
4326362
zma-u.5
for
100273845
bra-r.6
for
103861832
vvi-u.5
for
100260774
ppo-u.5
for
7459966
ppo-u.5
for
18106796
mtr-u.5
for
11414546
tae-r.2
for
123069430
tae-r.2
for
123077935
tae-r.2
for
123060847
hvu-r.1
for
123443297
ghi-r.1
for
107886796
ghi-r.1
for
107909268
bna-r.1
for
106440997
sbi-r.1
for
8061393
sbi-r.1
for
8077546
sot-r.1
for
102585720
cit-r.1
for
102621530
bdi-r.1
for
100837448
nta-r.1
for
107820775
nta-r.1
for
107809218


Ortholog ID: 10231
Species cre ath gma sly osa zma bra vvi ppo ppo mtr tae tae tae hvu ghi ghi bna sbi sbi sot cit bdi nta nta
Symbol CHLRE_07g318702v5 AT4G28450 LOC100812671 LOC101251902 LOC4326362 LOC100273845 LOC103861832 LOC100260774 LOC7459966 LOC18106796 LOC11414546 LOC123069430 LOC123077935 LOC123060847 LOC123443297 LOC107886796 LOC107909268 LOC106440997 LOC8061393 LOC8077546 LOC102585720 LOC102621530 LOC100837448 LOC107820775 LOC107809218
Function* uncharacterized protein WD repeat and SOF domain-containing protein 1 DDB1- and CUL4-associated factor 13 uncharacterized LOC101251902 uncharacterized LOC4326362 protein SOF1 DDB1- and CUL4-associated factor 13 uncharacterized LOC100260774 uncharacterized LOC7459966 uncharacterized LOC18106796 DDB1- and CUL4-associated factor 13 DDB1- and CUL4-associated factor 13 DDB1- and CUL4-associated factor 13 DDB1- and CUL4-associated factor 13 DDB1- and CUL4-associated factor 13 DDB1- and CUL4-associated factor 13 DDB1- and CUL4-associated factor 13 DDB1- and CUL4-associated factor 13 DDB1- and CUL4-associated factor 13 DDB1- and CUL4-associated factor 13 DDB1- and CUL4-associated factor 13 uncharacterized LOC102621530 DDB1- and CUL4-associated factor 13 uncharacterized LOC107820775 uncharacterized LOC107809218
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 6
cre03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 5
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 3
gma03020 RNA polymerase 2
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03008 Ribosome biogenesis in eukaryotes 3
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03030 DNA replication 2
sbi00970 Aminoacyl-tRNA biosynthesis 2
sbi03020 RNA polymerase 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 6
sot00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
nta00280 Valine, leucine and isoleucine degradation 2
nta00410 beta-Alanine metabolism 2
nta00640 Propanoate metabolism 2
nta01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 6
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5726563 828962 100812671 101251902 4326362 100273845 103861832 100260774 7459966 18106796 11414546 123069430 123077935 123060847 123443297 107886796 107909268 106440997 8061393 8077546 102585720 102621530 100837448 107820775 107809218
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