ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cre-r.1	CHLRE_11g467574v5	uncharacterized protein
ath-u.5	AT2G22690	zinc ion binding protein
ath-u.5	AT4G37880	LisH/CRA/RING-U-box domains-containing protein
ath-u.5	AT5G09630	LisH/CRA/RING-U-box domains-containing protein
gma-u.5	100799584	protein RMD5 homolog
gma-u.5	100792593	protein RMD5 homolog
gma-u.5	100788371	protein RMD5 homolog
sly-u.5	101249974	protein RMD5 homolog
osa-u.5	4341403	protein RMD5 homolog
zma-u.5	100282775	uncharacterized LOC100282775
bra-r.6	103856919	protein RMD5 homolog
vvi-u.5	100252683	protein RMD5 homolog
ppo-u.5	7482186	protein RMD5 homolog
ppo-u.5	7478687	protein RMD5 homolog
ppo-u.5	7478770	protein RMD5 homolog
mtr-u.5	11437981	protein RMD5 homolog
mtr-u.5	11434344	protein RMD5 homolog
tae-r.2	123071322	protein RMD5 homolog
tae-r.2	123079661	protein RMD5 homolog
tae-r.2	123127955	protein RMD5 homolog
hvu-r.1	123444964	protein RMD5 homolog
hvu-r.1	123409735	protein RMD5 homolog
hvu-r.1	123403486	protein RMD5 homolog
ghi-r.1	121209319	protein RMD5 homolog
ghi-r.1	121208262	protein RMD5 homolog
ghi-r.1	107950500	protein RMD5 homolog
bna-r.1	106426840	protein RMD5 homolog
bna-r.1	106389761	protein RMD5 homolog
bna-r.1	106436853	protein RMD5 homolog
sbi-r.1	8073176	protein RMD5 homolog A
sot-r.1	102586858	protein RMD5 homolog A
cit-r.1	102619036	protein RMD5 homolog
cit-r.1	102628081	protein RMD5 homolog
bdi-r.1	100835107	protein RMD5 homolog
bdi-r.1	100827965	protein RMD5 homolog
nta-r.1	107829980	protein RMD5 homolog
nta-r.1	107805440	protein RMD5 homolog

Top 50 coexpressed genes to CHLRE_11g467574v5 (cre-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CHLRE_11g467574v5 (cre-r.1 coexpression data)

CoexMap"5726948"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0043161 [list] [network] proteasome-mediated ubiquitin-dependent protein catabolic process

(98 genes)

IEA

GO CC

GO:0034657 [list] [network] GID complex	(4 genes)	IEA
GO:0005634 [list] [network] nucleus	(1576 genes)	IEA
GO:0005737 [list] [network] cytoplasm	(2907 genes)	IEA

GO MF

GO:0061630 [list] [network] ubiquitin protein ligase activity	(65 genes)	IEA
GO:0005515 [list] [network] protein binding	(1927 genes)	IEA

Protein

XP_042919321.1 [sequence] [blastp]
XP_042919322.1 [sequence] [blastp]
XP_042919323.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 9	(predict for XP_042919321.1)
mito 4, cyto 3, nucl 2, chlo_mito 2, nucl_plas 2	(predict for XP_042919322.1)
mito 4, cyto 4, nucl 1	(predict for XP_042919323.1)

Subcellular
localization
TargetP

other 3	(predict for XP_042919321.1)
other 8	(predict for XP_042919322.1)
other 8	(predict for XP_042919323.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_11g467574v5	ath-u.5 for AT2G22690	ath-u.5 for AT4G37880	ath-u.5 for AT5G09630	gma-u.5 for 100799584	gma-u.5 for 100792593	gma-u.5 for 100788371	sly-u.5 for 101249974	osa-u.5 for 4341403	zma-u.5 for 100282775	bra-r.6 for 103856919	vvi-u.5 for 100252683	ppo-u.5 for 7482186	ppo-u.5 for 7478687	ppo-u.5 for 7478770	mtr-u.5 for 11437981	mtr-u.5 for 11434344	tae-r.2 for 123071322	tae-r.2 for 123079661	tae-r.2 for 123127955	hvu-r.1 for 123444964	hvu-r.1 for 123409735	hvu-r.1 for 123403486	ghi-r.1 for 121209319	ghi-r.1 for 121208262	ghi-r.1 for 107950500	bna-r.1 for 106426840	bna-r.1 for 106389761	bna-r.1 for 106436853	sbi-r.1 for 8073176	sot-r.1 for 102586858	cit-r.1 for 102619036	cit-r.1 for 102628081	bdi-r.1 for 100835107	bdi-r.1 for 100827965	nta-r.1 for 107829980	nta-r.1 for 107805440

Ortholog

Ortholog ID: 3304

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

Function^*

uncharacterized protein

zinc ion binding protein

LisH/CRA/RING-U-box domains-containing protein

protein RMD5 homolog

uncharacterized LOC100282775

protein RMD5 homolog

protein RMD5 homolog A

protein RMD5 homolog

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04136	Autophagy - other	5
cre04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04136	Autophagy - other	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04136	Autophagy - other	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	3
tae04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03050	Proteasome	2
hvu00071	Fatty acid degradation	2
hvu00410	beta-Alanine metabolism	2
hvu00640	Propanoate metabolism	2
hvu01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03272	Virion - Hepatitis viruses	2
ghi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	3
ghi04130	SNARE interactions in vesicular transport	2
ghi00740	Riboflavin metabolism	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03272	Virion - Hepatitis viruses	2
ghi04144	Endocytosis	2
ghi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	3
bna04120	Ubiquitin mediated proteolysis	2
bna04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	5
bna04141	Protein processing in endoplasmic reticulum	2
bna04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	4
bna04141	Protein processing in endoplasmic reticulum	4
bna04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	4
sot04120	Ubiquitin mediated proteolysis	2
sot03008	Ribosome biogenesis in eukaryotes	2
sot03083	Polycomb repressive complex	2
sot04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	2
cit03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03050	Proteasome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	2
bdi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04016	MAPK signaling pathway - plant	3
nta04075	Plant hormone signal transduction	3
nta04626	Plant-pathogen interaction	3
nta04136	Autophagy - other	2
nta00770	Pantothenate and CoA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04016	MAPK signaling pathway - plant	4
nta04075	Plant hormone signal transduction	4
nta04626	Plant-pathogen interaction	4
nta04136	Autophagy - other	2
nta03022	Basal transcription factors	2

Expression

Expression pattern

Entrez Gene ID^*

5726948

816800

829944

830822

100799584

100792593

100782483

101249974

4341403

100282775

103856919

100252683

7482186

7478687

7481820

11437981

11434344

123071322

123165746

123148091

123444964

123409735

123403486

107950500

107945116

107914351

106426840

106389761

106361391

8073176

102586858

102619036

102628081

100835107

100827965

107829980

107805440

The preparation time of this page was 0.2 [sec].


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	3	3	1	1	1	1	1	3	2	3	3	3	3	1	1	2	2	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_11g467574v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_11g467574v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**