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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_16g665800v5   uncharacterized protein 
 cre-r.1   CHLRE_16g663850v5   uncharacterized protein 
 ath-u.5   SS4   starch synthase 4 
 gma-u.5   100788308   probable starch synthase 4, chloroplastic/amyloplastic 
 gma-u.5   100804775   probable starch synthase 4, chloroplastic/amyloplastic 
 sly-u.5   100191117   starch synthase VI 
 sly-u.5   100316881   starch synthase IV 
 osa-u.5   4324654   probable starch synthase 4, chloroplastic/amyloplastic 
 osa-u.5   4339426   probable starch synthase 4, chloroplastic/amyloplastic 
 zma-u.5   100170236   starch synthase IV 
 bra-r.6   103834053   probable starch synthase 4, chloroplastic/amyloplastic 
 vvi-u.5   100233071   starch synthase VI 
 vvi-u.5   100257130   probable starch synthase 4, chloroplastic/amyloplastic 
 ppo-u.5   18107883   uncharacterized LOC18107883 
 ppo-u.5   7487835   probable starch synthase 4, chloroplastic/amyloplastic 
 mtr-u.5   25493390   probable starch synthase 4, chloroplastic/amyloplastic 
 tae-r.2   123141968   probable starch synthase 4, chloroplastic/amyloplastic 
 tae-r.2   123182767   probable starch synthase 4, chloroplastic/amyloplastic 
 tae-r.2   543061   probable starch synthase 4, chloroplastic/amyloplastic 
 hvu-r.1   123448543   probable starch synthase 4, chloroplastic/amyloplastic 
 ghi-r.1   121218677   probable starch synthase 4, chloroplastic/amyloplastic 
 ghi-r.1   107960253   probable starch synthase 4, chloroplastic/amyloplastic 
 ghi-r.1   107935913   probable starch synthase 4, chloroplastic/amyloplastic 
 bna-r.1   106360862   probable starch synthase 4, chloroplastic/amyloplastic 
 bna-r.1   106430626   probable starch synthase 4, chloroplastic/amyloplastic 
 sbi-r.1   8068976   probable starch synthase 4, chloroplastic/amyloplastic 
 sot-r.1   102579881   glycogen synthase-like 
 cit-r.1   102626137   probable starch synthase 4, chloroplastic/amyloplastic 
 cit-r.1   102627834   uncharacterized LOC102627834 
 bdi-r.1   100836636   probable starch synthase 4, chloroplastic/amyloplastic 
 nta-r.1   107776230   putative starch synthase 4, chloroplastic/amyloplastic 
 nta-r.1   107766543   uncharacterized LOC107766543 
 nta-r.1   107760348   uncharacterized LOC107760348 

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Top 50 coexpressed genes to CHLRE_16g665800v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_16g665800v5 (cre-r.1 coexpression data)

CoexMap"5727013"


creCHLRE_16g665800v5 | Entrez gene ID : 5727013      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 2 1 2 2 2 1 1 2 2 1 3 1 3 2 1 1 2 1 3
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre00500 [list] [network] Starch and sucrose metabolism (47 genes)
GO BP
GO CC
GO MF
GO:0004373 [list] [network] alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity  (7 genes)  IEA  
Protein XP_001701469.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 8,  chlo_mito 5,  chlo 1  (predict for XP_001701469.1)
Subcellular
localization
TargetP
mito 9  (predict for XP_001701469.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_16g665800v5
cre-r.1
for
CHLRE_16g663850v5
ath-u.5
for
SS4
gma-u.5
for
100788308
gma-u.5
for
100804775
sly-u.5
for
100191117
sly-u.5
for
100316881
osa-u.5
for
4324654
osa-u.5
for
4339426
zma-u.5
for
100170236
bra-r.6
for
103834053
vvi-u.5
for
100233071
vvi-u.5
for
100257130
ppo-u.5
for
18107883
ppo-u.5
for
7487835
mtr-u.5
for
25493390
tae-r.2
for
123141968
tae-r.2
for
123182767
tae-r.2
for
543061
hvu-r.1
for
123448543
ghi-r.1
for
121218677
ghi-r.1
for
107960253
ghi-r.1
for
107935913
bna-r.1
for
106360862
bna-r.1
for
106430626
sbi-r.1
for
8068976
sot-r.1
for
102579881
cit-r.1
for
102626137
cit-r.1
for
102627834
bdi-r.1
for
100836636
nta-r.1
for
107776230
nta-r.1
for
107766543
nta-r.1
for
107760348


Ortholog ID: 6039
Species cre cre ath gma gma sly sly osa osa zma bra vvi vvi ppo ppo mtr tae tae tae hvu ghi ghi ghi bna bna sbi sot cit cit bdi nta nta nta
Symbol CHLRE_16g665800v5 CHLRE_16g663850v5 SS4 LOC100788308 LOC100804775 LOC100191117 LOC100316881 LOC4324654 LOC4339426 LOC100170236 LOC103834053 LOC100233071 LOC100257130 LOC18107883 LOC7487835 LOC25493390 LOC123141968 LOC123182767 LOC543061 LOC123448543 LOC121218677 LOC107935913 LOC107913770 LOC106360862 LOC106430626 LOC8068976 LOC102579881 LOC102626137 LOC102627834 LOC100836636 LOC107766543 LOC107760348 LOC107807888
Function* uncharacterized protein uncharacterized protein starch synthase 4 probable starch synthase 4, chloroplastic/amyloplastic probable starch synthase 4, chloroplastic/amyloplastic starch synthase VI starch synthase IV probable starch synthase 4, chloroplastic/amyloplastic probable starch synthase 4, chloroplastic/amyloplastic starch synthase IV probable starch synthase 4, chloroplastic/amyloplastic starch synthase VI probable starch synthase 4, chloroplastic/amyloplastic uncharacterized LOC18107883 probable starch synthase 4, chloroplastic/amyloplastic probable starch synthase 4, chloroplastic/amyloplastic probable starch synthase 4, chloroplastic/amyloplastic probable starch synthase 4, chloroplastic/amyloplastic probable starch synthase 4, chloroplastic/amyloplastic probable starch synthase 4, chloroplastic/amyloplastic probable starch synthase 4, chloroplastic/amyloplastic probable starch synthase 4, chloroplastic/amyloplastic probable starch synthase 4, chloroplastic/amyloplastic probable starch synthase 4, chloroplastic/amyloplastic probable starch synthase 4, chloroplastic/amyloplastic probable starch synthase 4, chloroplastic/amyloplastic glycogen synthase-like probable starch synthase 4, chloroplastic/amyloplastic uncharacterized LOC102627834 probable starch synthase 4, chloroplastic/amyloplastic uncharacterized LOC107766543 uncharacterized LOC107760348 putative starch synthase 4, chloroplastic/amyloplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00010 Glycolysis / Gluconeogenesis 2
cre00030 Pentose phosphate pathway 2
cre00051 Fructose and mannose metabolism 2
cre00710 Carbon fixation by Calvin cycle 2
cre01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00500 Starch and sucrose metabolism 7
ath00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 4
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 4
gma00500 Starch and sucrose metabolism 2
gma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04142 Lysosome 2
sly00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00330 Arginine and proline metabolism 2
osa01230 Biosynthesis of amino acids 2
osa00190 Oxidative phosphorylation 2
osa04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 2
bra00500 Starch and sucrose metabolism 2
bra00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 3
tae03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 3
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00480 Glutathione metabolism 4
ghi03018 RNA degradation 2
ghi00970 Aminoacyl-tRNA biosynthesis 2
ghi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00561 Glycerolipid metabolism 3
bna00500 Starch and sucrose metabolism 2
bna03060 Protein export 2
bna02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna02010 ABC transporters 3
bna00500 Starch and sucrose metabolism 2
bna00561 Glycerolipid metabolism 2
bna03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 4
sot00561 Glycerolipid metabolism 2
sot00053 Ascorbate and aldarate metabolism 2
sot00562 Inositol phosphate metabolism 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00630 Glyoxylate and dicarboxylate metabolism 3
bdi01200 Carbon metabolism 3
bdi00260 Glycine, serine and threonine metabolism 2
bdi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta02010 ABC transporters 2
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
nta03083 Polycomb repressive complex 2
nta03050 Proteasome 2
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
nta00970 Aminoacyl-tRNA biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5727013 5727030 827550 100788308 100804775 100191117 100316881 4324654 4339426 100170236 103834053 100233071 100257130 18107883 7487835 25493390 123141968 123182767 543061 123448543 121218677 107935913 107913770 106360862 106430626 8068976 102579881 102626137 102627834 100836636 107766543 107760348 107807888
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