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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_06g295200v5   uncharacterized protein 
 ath-u.5   CRY1   cryptochrome 1 
 ath-u.5   CRY2   cryptochrome 2 
 gma-u.5   CRY1a   cryptochrome 1 
 gma-u.5   100786551   cryptochrome-1-like 
 gma-u.5   100808627   cryptochrome-2-like 
 sly-u.5   CRY2   cryptochrome 2 
 sly-u.5   CRY1a   cryptochrome 1 
 sly-u.5   Cry1b   cryptochrome 1b 
 osa-u.5   9270575   cryptochrome-1 
 osa-u.5   4336008   cryptochrome-1 
 osa-u.5   4329738   cryptochrome-1 
 zma-u.5   100502533   cryptochrome 2 
 zma-u.5   100194126   cryptochrome2 
 bra-r.6   103836576   cryptochrome-2 
 bra-r.6   CRY1   cryptochrome circadian clock 1 
 bra-r.6   103844260   cryptochrome-2 
 vvi-u.5   100254022   cryptochrome-1 
 vvi-u.5   100247664   cryptochrome-1 
 ppo-u.5   18102473   cryptochrome-1 
 ppo-u.5   7495156   cryptochrome-1 
 ppo-u.5   7486597   cryptochrome-1 
 mtr-u.5   25484452   cryptochrome-1 
 mtr-u.5   11428875   cryptochrome-1 
 mtr-u.5   11418875   cryptochrome-1 
 tae-r.2   123045624   cryptochrome-1 
 tae-r.2   123053473   cryptochrome-1 
 tae-r.2   123127529   cryptochrome-1 
 hvu-r.1   123406235   cryptochrome-1 
 hvu-r.1   123401420   cryptochrome-1-like 
 hvu-r.1   123426879   cryptochrome-1-like 
 ghi-r.1   107929100   cryptochrome-1 
 ghi-r.1   121221044   cryptochrome-1 
 ghi-r.1   121217897   cryptochrome-1 
 bna-r.1   106369426   cryptochrome-2-like 
 bna-r.1   106371016   cryptochrome-2-like 
 bna-r.1   106429586   cryptochrome-1-like 
 sbi-r.1   110435145   cryptochrome-1-like 
 sbi-r.1   110436666   cryptochrome-1-like 
 sbi-r.1   8078292   cryptochrome-1 
 sot-r.1   102588921   cryptochrome-1 
 sot-r.1   102580483   cryptochrome-1-like 
 sot-r.1   102583141   cryptochrome-1-like 
 cit-r.1   102609249   cryptochrome-1 
 cit-r.1   102630424   cryptochrome-1 
 bdi-r.1   100839051   cryptochrome-1 
 bdi-r.1   100838321   cryptochrome-1 
 bdi-r.1   100833505   cryptochrome-1 
 nta-r.1   107820217   cryptochrome-1 
 nta-r.1   107813393   cryptochrome-1 
 nta-r.1   107790758   cryptochrome-1 

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Top 50 coexpressed genes to CHLRE_06g295200v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_06g295200v5 (cre-r.1 coexpression data)

CoexMap"5727125"


creCHLRE_06g295200v5 | Entrez gene ID : 5727125      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 2 3 3 3 2 3 2 3 3 3 3 3 3 3 3 2 3 3
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0043153 [list] [network] entrainment of circadian clock by photoperiod  (2 genes)  IEA  
GO:0032922 [list] [network] circadian regulation of gene expression  (3 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (2907 genes)  IEA  
GO MF
GO:0071949 [list] [network] FAD binding  (46 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (670 genes)  IEA  
Protein XP_001701553.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  E.R. 3,  cyto_nucl 3  (predict for XP_001701553.1)
Subcellular
localization
TargetP
other 5  (predict for XP_001701553.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_06g295200v5
ath-u.5
for
CRY1
ath-u.5
for
CRY2
gma-u.5
for
CRY1a
gma-u.5
for
100786551
gma-u.5
for
100808627
sly-u.5
for
CRY2
sly-u.5
for
CRY1a
sly-u.5
for
Cry1b
osa-u.5
for
9270575
osa-u.5
for
4336008
osa-u.5
for
4329738
zma-u.5
for
100502533
zma-u.5
for
100194126
bra-r.6
for
103836576
bra-r.6
for
CRY1
bra-r.6
for
103844260
vvi-u.5
for
100254022
vvi-u.5
for
100247664
ppo-u.5
for
18102473
ppo-u.5
for
7495156
ppo-u.5
for
7486597
mtr-u.5
for
25484452
mtr-u.5
for
11428875
mtr-u.5
for
11418875
tae-r.2
for
123045624
tae-r.2
for
123053473
tae-r.2
for
123127529
hvu-r.1
for
123406235
hvu-r.1
for
123401420
hvu-r.1
for
123426879
ghi-r.1
for
107929100
ghi-r.1
for
121221044
ghi-r.1
for
121217897
bna-r.1
for
106369426
bna-r.1
for
106371016
bna-r.1
for
106429586
sbi-r.1
for
110435145
sbi-r.1
for
110436666
sbi-r.1
for
8078292
sot-r.1
for
102588921
sot-r.1
for
102580483
sot-r.1
for
102583141
cit-r.1
for
102609249
cit-r.1
for
102630424
bdi-r.1
for
100839051
bdi-r.1
for
100838321
bdi-r.1
for
100833505
nta-r.1
for
107820217
nta-r.1
for
107813393
nta-r.1
for
107790758


Ortholog ID: 1712
Species cre ath ath gma gma gma sly sly sly osa osa osa zma zma zma bra bra bra vvi vvi ppo ppo ppo mtr mtr mtr tae tae tae hvu hvu hvu ghi ghi ghi bna bna bna sbi sbi sbi sot sot sot cit cit bdi bdi bdi nta nta nta
Symbol CHLRE_06g295200v5 CRY1 CRY2 CRY1a LOC100815428 LOC100233234 CRY2 CRY1a Cry1b LOC9270575 LOC4336008 LOC4329738 LOC100502533 LOC100194126 LOC100277533 LOC103836576 CRY1 LOC103844260 LOC100254022 LOC100247664 LOC18102473 LOC7495156 LOC7486597 LOC25484452 LOC11428875 LOC11418875 LOC123189391 LOC100136972 LOC100136971 LOC123406235 LOC123401420 LOC123426879 LOC107929100 LOC121217897 LOC107905111 LOC106369426 LOC106422131 LOC111197715 LOC110435145 LOC110436666 LOC8078292 LOC102588921 LOC102580483 LOC102583141 LOC102609249 LOC102630424 LOC100839051 LOC100838321 LOC100833505 LOC107813393 LOC107790240 LOC107830603
Function* uncharacterized protein cryptochrome 1 cryptochrome 2 cryptochrome 1 cryptochrome-1-like cryptochrome 2 cryptochrome 2 cryptochrome 1 cryptochrome 1b cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome 2 cryptochrome2 uncharacterized LOC100277533 cryptochrome-2 cryptochrome circadian clock 1 cryptochrome-2 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1-like cryptochrome-1-like cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-2-like cryptochrome-1 cryptochrome-2 cryptochrome-1-like cryptochrome-1-like cryptochrome-1 cryptochrome-1 cryptochrome-1-like cryptochrome-1-like cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00860 Porphyrin metabolism 4
ath00900 Terpenoid backbone biosynthesis 3
ath04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00500 Starch and sucrose metabolism 4
ath04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00860 Porphyrin metabolism 3
sly04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 3
sly00195 Photosynthesis 3
sly00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04712 Circadian rhythm - plant 2
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04148 Efferocytosis 2
vvi00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00280 Valine, leucine and isoleucine degradation 2
ppo00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04016 MAPK signaling pathway - plant 3
mtr04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 8
tae04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 8
tae00053 Ascorbate and aldarate metabolism 3
tae01240 Biosynthesis of cofactors 3
tae04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04075 Plant hormone signal transduction 2
hvu04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 6
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 4
ghi00062 Fatty acid elongation 2
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 2
bna04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 3
sot00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 2
sot01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00630 Glyoxylate and dicarboxylate metabolism 5
bdi01200 Carbon metabolism 5
bdi04712 Circadian rhythm - plant 2
bdi00710 Carbon fixation by Calvin cycle 2
bdi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 3
bdi04120 Ubiquitin mediated proteolysis 2
bdi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01240 Biosynthesis of cofactors 3
bdi04712 Circadian rhythm - plant 2
bdi00740 Riboflavin metabolism 2
bdi00260 Glycine, serine and threonine metabolism 2
bdi00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00562 Inositol phosphate metabolism 4
nta04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00562 Inositol phosphate metabolism 4
nta04712 Circadian rhythm - plant 2
nta04144 Endocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5727125 826470 839529 100233233 100815428 100233234 543596 544219 543688 9270575 4336008 4329738 100502533 100194126 100277533 103836576 103838805 103844260 100254022 100247664 18102473 7495156 7486597 25484452 11428875 11418875 123189391 100136972 100136971 123406235 123401420 123426879 107929100 121217897 107905111 106369426 106422131 111197715 110435145 110436666 8078292 102588921 102580483 102583141 102609249 102630424 100839051 100838321 100833505 107813393 107790240 107830603
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