ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cre-r.1	CHLRE_02g080350v5	uncharacterized protein
ath-u.5	UBP14	ubiquitin-specific protease 14
gma-u.5	100816664	ubiquitin carboxyl-terminal hydrolase 14
gma-u.5	100805602	ubiquitin carboxyl-terminal hydrolase 14
sly-u.5	101266142	ubiquitin carboxyl-terminal hydrolase 14
osa-u.5	4323863	ubiquitin carboxyl-terminal hydrolase 14
zma-u.5	100383086	uncharacterized LOC100383086
bra-r.6	103869299	ubiquitin carboxyl-terminal hydrolase 14
bra-r.6	103859870	ubiquitin carboxyl-terminal hydrolase 14
vvi-u.5	100264052	ubiquitin carboxyl-terminal hydrolase 14
ppo-u.5	18095668	ubiquitin carboxyl-terminal hydrolase 14
ppo-u.5	7460861	ubiquitin carboxyl-terminal hydrolase 14
mtr-u.5	11426205	ubiquitin carboxyl-terminal hydrolase 14
tae-r.2	123077561	ubiquitin carboxyl-terminal hydrolase 14
tae-r.2	123069036	ubiquitin carboxyl-terminal hydrolase 14
tae-r.2	123060490	ubiquitin carboxyl-terminal hydrolase 14
hvu-r.1	123443007	ubiquitin carboxyl-terminal hydrolase 14
ghi-r.1	107926289	ubiquitin carboxyl-terminal hydrolase 14
ghi-r.1	107920237	ubiquitin carboxyl-terminal hydrolase 14
bna-r.1	106357483	ubiquitin carboxyl-terminal hydrolase 14
bna-r.1	106424469	ubiquitin carboxyl-terminal hydrolase 14
bna-r.1	106377595	ubiquitin carboxyl-terminal hydrolase 14
sbi-r.1	8056530	ubiquitin carboxyl-terminal hydrolase 14
sot-r.1	102583138	ubiquitin carboxyl-terminal hydrolase 14
cit-r.1	102621591	ubiquitin carboxyl-terminal hydrolase 14
bdi-r.1	100833268	ubiquitin carboxyl-terminal hydrolase 14
nta-r.1	107784029	ubiquitin carboxyl-terminal hydrolase 14-like
nta-r.1	107811059	ubiquitin carboxyl-terminal hydrolase 14
nta-r.1	107798286	ubiquitin carboxyl-terminal hydrolase 14

Top 50 coexpressed genes to CHLRE_02g080350v5 (cre-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CHLRE_02g080350v5 (cre-r.1 coexpression data)

CoexMap"5727291"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0016579 [list] [network] protein deubiquitination

(65 genes)

IEA

GO CC

GO MF

GO:0004843 [list] [network] cysteine-type deubiquitinase activity	(41 genes)	IEA
GO:0008270 [list] [network] zinc ion binding	(213 genes)	IEA
GO:0005515 [list] [network] protein binding	(1927 genes)	IEA

Protein

XP_042926860.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, cyto 4, nucl 1

(predict for XP_042926860.1)

Subcellular
localization
TargetP

other 7

(predict for XP_042926860.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_02g080350v5	ath-u.5 for UBP14	gma-u.5 for 100816664	gma-u.5 for 100805602	sly-u.5 for 101266142	osa-u.5 for 4323863	zma-u.5 for 100383086	bra-r.6 for 103869299	bra-r.6 for 103859870	vvi-u.5 for 100264052	ppo-u.5 for 18095668	ppo-u.5 for 7460861	mtr-u.5 for 11426205	tae-r.2 for 123077561	tae-r.2 for 123069036	tae-r.2 for 123060490	hvu-r.1 for 123443007	ghi-r.1 for 107926289	ghi-r.1 for 107920237	bna-r.1 for 106357483	bna-r.1 for 106424469	bna-r.1 for 106377595	sbi-r.1 for 8056530	sot-r.1 for 102583138	cit-r.1 for 102621591	bdi-r.1 for 100833268	nta-r.1 for 107784029	nta-r.1 for 107811059	nta-r.1 for 107798286

Ortholog

Ortholog ID: 7225

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

UBP14

Function^*

uncharacterized protein

ubiquitin-specific protease 14

ubiquitin carboxyl-terminal hydrolase 14

uncharacterized LOC100383086

ubiquitin carboxyl-terminal hydrolase 14

ubiquitin carboxyl-terminal hydrolase 14-like

ubiquitin carboxyl-terminal hydrolase 14

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	5
gma03013	Nucleocytoplasmic transport	3
gma03015	mRNA surveillance pathway	3
gma04141	Protein processing in endoplasmic reticulum	2
gma00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03013	Nucleocytoplasmic transport	4
gma03015	mRNA surveillance pathway	4
gma03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00970	Aminoacyl-tRNA biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03013	Nucleocytoplasmic transport	4
osa04141	Protein processing in endoplasmic reticulum	3
osa03083	Polycomb repressive complex	2
osa00510	N-Glycan biosynthesis	2
osa00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00970	Aminoacyl-tRNA biosynthesis	7
zma03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03013	Nucleocytoplasmic transport	5
bra03040	Spliceosome	3
bra03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	4
bra03013	Nucleocytoplasmic transport	3
bra03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04142	Lysosome	3
vvi03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	3
ppo03015	mRNA surveillance pathway	2
ppo04136	Autophagy - other	2
ppo04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	4
ppo03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04141	Protein processing in endoplasmic reticulum	4
mtr04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	2
tae04141	Protein processing in endoplasmic reticulum	2
tae03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	3
tae04141	Protein processing in endoplasmic reticulum	2
tae03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	3
tae04141	Protein processing in endoplasmic reticulum	2
tae03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04120	Ubiquitin mediated proteolysis	3
hvu03083	Polycomb repressive complex	2
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03050	Proteasome	8
ghi04141	Protein processing in endoplasmic reticulum	2
ghi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03050	Proteasome	12
ghi04141	Protein processing in endoplasmic reticulum	2
ghi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03015	mRNA surveillance pathway	3
sbi03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03050	Proteasome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	9
nta00510	N-Glycan biosynthesis	5
nta00513	Various types of N-glycan biosynthesis	5
nta04145	Phagosome	4
nta04148	Efferocytosis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	12
nta00510	N-Glycan biosynthesis	8
nta00513	Various types of N-glycan biosynthesis	8
nta04145	Phagosome	4
nta04148	Efferocytosis	4

Expression

Expression pattern

Entrez Gene ID^*

5727291

821610

100816664

100805602

101266142

4323863

100383086

103869299

103859870

100264052

18095668

7460861

11426205

123077561

123069036

123060490

123443007

107926289

107920237

106424469

106377595

106389274

8056530

102583138

102621591

100833268

107784029

107798286

107812079

The preparation time of this page was 0.4 [sec].


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	1	2	1	1	1	2	1	2	1	3	1	2	3	1	1	1	1	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_02g080350v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_02g080350v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**