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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g514950v5   uncharacterized protein 
 ath-u.5   AT1G30680   toprim domain-containing protein 
 gma-u.5   100804637   twinkle homolog protein, chloroplastic/mitochondrial 
 gma-u.5   100779625   twinkle homolog protein, chloroplastic/mitochondrial 
 sly-u.5   101264268   twinkle homolog protein, chloroplastic/mitochondrial 
 osa-u.5   4341808   twinkle homolog protein, chloroplastic/mitochondrial 
 zma-u.5   103629647   twinkle homolog protein, chloroplastic/mitochondrial 
 bra-r.6   103840315   twinkle homolog protein, chloroplastic/mitochondrial 
 vvi-u.5   100257655   twinkle homolog protein, chloroplastic/mitochondrial 
 vvi-u.5   100247126   twinkle homolog protein, chloroplastic/mitochondrial 
 ppo-u.5   7480391   twinkle homolog protein, chloroplastic/mitochondrial 
 mtr-u.5   25486321   twinkle homolog protein, chloroplastic/mitochondrial 
 tae-r.2   123157297   twinkle homolog protein, chloroplastic/mitochondrial 
 tae-r.2   123149113   twinkle homolog protein, chloroplastic/mitochondrial 
 tae-r.2   123165625   twinkle homolog protein, chloroplastic/mitochondrial 
 hvu-r.1   123413648   twinkle homolog protein, chloroplastic/mitochondrial-like 
 ghi-r.1   107958509   twinkle homolog protein, chloroplastic/mitochondrial 
 ghi-r.1   107906337   twinkle homolog protein, chloroplastic/mitochondrial 
 bna-r.1   106406957   twinkle homolog protein, chloroplastic/mitochondrial-like 
 bna-r.1   106367250   twinkle homolog protein, chloroplastic/mitochondrial 
 sbi-r.1   8061599   twinkle homolog protein, chloroplastic/mitochondrial 
 sot-r.1   102601660   twinkle homolog protein, chloroplastic/mitochondrial 
 cit-r.1   102625113   twinkle homolog protein, chloroplastic/mitochondrial 
 bdi-r.1   100846256   twinkle homolog protein, chloroplastic/mitochondrial 
 nta-r.1   107819042   twinkle homolog protein, chloroplastic/mitochondrial-like 
 nta-r.1   107826455   twinkle homolog protein, chloroplastic/mitochondrial 

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Top 50 coexpressed genes to CHLRE_12g514950v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g514950v5 (cre-r.1 coexpression data)

CoexMap"5728554"


creCHLRE_12g514950v5 | Entrez gene ID : 5728554    
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 2 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006260 [list] [network] DNA replication  (93 genes)  IEA  
GO CC
GO MF
GO:0043139 [list] [network] 5'-3' DNA helicase activity  (10 genes)  IEA  
GO:0003697 [list] [network] single-stranded DNA binding  (46 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1223 genes)  IEA  
Protein XP_042918380.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  chlo 4  (predict for XP_042918380.1)
Subcellular
localization
TargetP
chlo 5,  mito 3  (predict for XP_042918380.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g514950v5
ath-u.5
for
AT1G30680
gma-u.5
for
100804637
gma-u.5
for
100779625
sly-u.5
for
101264268
osa-u.5
for
4341808
zma-u.5
for
103629647
bra-r.6
for
103840315
vvi-u.5
for
100257655
vvi-u.5
for
100247126
ppo-u.5
for
7480391
mtr-u.5
for
25486321
tae-r.2
for
123157297
tae-r.2
for
123149113
tae-r.2
for
123165625
hvu-r.1
for
123413648
ghi-r.1
for
107958509
ghi-r.1
for
107906337
bna-r.1
for
106406957
bna-r.1
for
106367250
sbi-r.1
for
8061599
sot-r.1
for
102601660
cit-r.1
for
102625113
bdi-r.1
for
100846256
nta-r.1
for
107819042
nta-r.1
for
107826455


Ortholog ID: 9819
Species cre ath gma gma sly osa zma bra vvi vvi ppo mtr tae tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol CHLRE_12g514950v5 AT1G30680 LOC100804637 LOC100779625 LOC101264268 LOC4341808 LOC103629647 LOC103840315 LOC100257655 LOC100247126 LOC7480391 LOC25486321 LOC123157297 LOC123149113 LOC123165625 LOC123413648 LOC107958509 LOC107906337 LOC106406957 LOC106367250 LOC8061599 LOC102601660 LOC102625113 LOC100846256 LOC107819042 LOC107826455
Function* uncharacterized protein toprim domain-containing protein twinkle homolog protein, chloroplastic/mitochondrial twinkle homolog protein, chloroplastic/mitochondrial twinkle homolog protein, chloroplastic/mitochondrial twinkle homolog protein, chloroplastic/mitochondrial twinkle homolog protein, chloroplastic/mitochondrial twinkle homolog protein, chloroplastic/mitochondrial twinkle homolog protein, chloroplastic/mitochondrial twinkle homolog protein, chloroplastic/mitochondrial twinkle homolog protein, chloroplastic/mitochondrial twinkle homolog protein, chloroplastic/mitochondrial twinkle homolog protein, chloroplastic/mitochondrial twinkle homolog protein, chloroplastic/mitochondrial twinkle homolog protein, chloroplastic/mitochondrial twinkle homolog protein, chloroplastic/mitochondrial-like twinkle homolog protein, chloroplastic/mitochondrial twinkle homolog protein, chloroplastic/mitochondrial twinkle homolog protein, chloroplastic/mitochondrial-like twinkle homolog protein, chloroplastic/mitochondrial twinkle homolog protein, chloroplastic/mitochondrial twinkle homolog protein, chloroplastic/mitochondrial twinkle homolog protein, chloroplastic/mitochondrial twinkle homolog protein, chloroplastic/mitochondrial twinkle homolog protein, chloroplastic/mitochondrial-like twinkle homolog protein, chloroplastic/mitochondrial
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 2
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 2
sly03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03440 Homologous recombination 2
vvi03013 Nucleocytoplasmic transport 2
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 3
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00290 Valine, leucine and isoleucine biosynthesis 2
tae00770 Pantothenate and CoA biosynthesis 2
tae01210 2-Oxocarboxylic acid metabolism 2
tae01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00220 Arginine biosynthesis 2
ghi00330 Arginine and proline metabolism 2
ghi04626 Plant-pathogen interaction 2
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00540 Lipopolysaccharide biosynthesis 2
ghi00220 Arginine biosynthesis 2
ghi00330 Arginine and proline metabolism 2
ghi04626 Plant-pathogen interaction 2
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 5
bna03013 Nucleocytoplasmic transport 4
bna03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 5
bna03018 RNA degradation 3
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03440 Homologous recombination 2
sbi03013 Nucleocytoplasmic transport 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 5
sot03020 RNA polymerase 2
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 4
cit03020 RNA polymerase 2
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
nta00010 Glycolysis / Gluconeogenesis 2
nta00030 Pentose phosphate pathway 2
nta00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
nta00010 Glycolysis / Gluconeogenesis 2
nta00030 Pentose phosphate pathway 2
nta00051 Fructose and mannose metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5728554 839948 100804637 100779625 101264268 4341808 103629647 103840315 100257655 100247126 7480391 25486321 123157297 123149113 123165625 123413648 107958509 107906337 106406957 106367250 8061599 102601660 102625113 100846256 107819042 107826455
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