ATTED-II : GeneCoexpression result

Species	Gene	Description
cre-r.1	CHLRE_03g176050v5	uncharacterized protein
ath-u.5	AT5G53800	nucleic acid-binding protein
gma-u.5	100808770	vicilin-like seed storage protein At2g18540
gma-u.5	100778706	DEAD-box ATP-dependent RNA helicase 42
sly-u.5	101248648	uncharacterized LOC101248648
osa-u.5	4336481	DEAD-box ATP-dependent RNA helicase 42
zma-u.5	100193500	OSJNBa0074L08.19-like protein
bra-r.6	103844847	vicilin-like seed storage protein At2g18540
vvi-u.5	100243517	vicilin-like seed storage protein At2g18540
ppo-u.5	7460828	uncharacterized LOC7460828
mtr-u.5	25487355	DEAD-box ATP-dependent RNA helicase 42
tae-r.2	123053918	RNA-binding protein 25
tae-r.2	123046039	RNA-binding protein 25
hvu-r.1	123427324	vicilin-like seed storage protein At2g18540
ghi-r.1	121216898	vicilin-like seed storage protein At2g18540
ghi-r.1	107948645	vicilin-like seed storage protein At2g18540
bna-r.1	106418720	vicilin-like seed storage protein At2g18540
bna-r.1	106371277	vicilin-like seed storage protein At2g18540
sbi-r.1	110436525	vicilin-like seed storage protein At2g18540
sot-r.1	102588621	RNA-binding protein 25
cit-r.1	102620193	vicilin-like seed storage protein At2g18540
bdi-r.1	100835067	vicilin-like seed storage protein At2g18540
nta-r.1	107791329	uncharacterized LOC107791329
nta-r.1	107821097	uncharacterized LOC107821097

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

XP_001703272.2 [sequence] [blastp]

Subcellular
localization
wolf

chlo 3, nucl 3, cyto 3, cyto_nucl 3

(predict for XP_001703272.2)

Subcellular
localization
TargetP

other 6

(predict for XP_001703272.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_03g176050v5	ath-u.5 for AT5G53800	gma-u.5 for 100808770	gma-u.5 for 100778706	sly-u.5 for 101248648	osa-u.5 for 4336481	zma-u.5 for 100193500	bra-r.6 for 103844847	vvi-u.5 for 100243517	ppo-u.5 for 7460828	mtr-u.5 for 25487355	tae-r.2 for 123053918	tae-r.2 for 123046039	hvu-r.1 for 123427324	ghi-r.1 for 121216898	ghi-r.1 for 107948645	bna-r.1 for 106418720	bna-r.1 for 106371277	sbi-r.1 for 110436525	sot-r.1 for 102588621	cit-r.1 for 102620193	bdi-r.1 for 100835067	nta-r.1 for 107791329	nta-r.1 for 107821097

Ortholog

Ortholog ID: 10996

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

Function^*

uncharacterized protein

nucleic acid-binding protein

vicilin-like seed storage protein At2g18540

DEAD-box ATP-dependent RNA helicase 42

uncharacterized LOC101248648

DEAD-box ATP-dependent RNA helicase 42

OSJNBa0074L08.19-like protein

vicilin-like seed storage protein At2g18540

uncharacterized LOC7460828

DEAD-box ATP-dependent RNA helicase 42

RNA-binding protein 25

vicilin-like seed storage protein At2g18540

RNA-binding protein 25

vicilin-like seed storage protein At2g18540

uncharacterized LOC107791329

uncharacterized LOC107821097

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	6
cre03015	mRNA surveillance pathway	2
cre03020	RNA polymerase	2
cre03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2
gma03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03022	Basal transcription factors	2
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03015	mRNA surveillance pathway	2
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	2
mtr04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	6
hvu03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	4
ghi03250	Viral life cycle - HIV-1	2
ghi03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	4
ghi03250	Viral life cycle - HIV-1	2
ghi03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00561	Glycerolipid metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

5728855

835461

100808770

100778706

101248648

4336481

100193500

103844847

100243517

7460828

25487355

123053918

123046039

123427324

121216898

107948645

106418720

106371277

110436525

102588621

102620193

100835067

107791329

107821097

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to CHLRE_03g176050v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_03g176050v5 (cre-r.1 coexpression data)


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	1	2	1	1	1	1	1	1	1	2	1	2	2	1	1	1	1	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_03g176050v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_03g176050v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**