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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_19g750247v5   uncharacterized protein 
 ath-u.5   Z-ISO   15-cis-zeta-carotene isomerase 
 gma-u.5   100820507   15-cis-zeta-carotene isomerase, chloroplastic 
 gma-u.5   100793910   15-cis-zeta-carotene isomerase 
 sly-u.5   Z-ISO   15-cis-zeta-carotene isomerase 
 osa-u.5   4352042   15-cis-zeta-carotene isomerase, chloroplastic 
 zma-u.5   100194203   15-cis-zeta-carotene isomerase, chloroplastic 
 bra-r.6   103871859   15-cis-zeta-carotene isomerase, chloroplastic 
 vvi-u.5   100258367   15-cis-zeta-carotene isomerase, chloroplastic 
 ppo-u.5   7466321   15-cis-zeta-carotene isomerase, chloroplastic 
 mtr-u.5   11437558   15-cis-zeta-carotene isomerase, chloroplastic 
 mtr-u.5   11436315   15-cis-zeta-carotene isomerase, chloroplastic 
 tae-r.2   123110269   15-cis-zeta-carotene isomerase, chloroplastic 
 tae-r.2   123119310   15-cis-zeta-carotene isomerase, chloroplastic 
 tae-r.2   123102131   15-cis-zeta-carotene isomerase, chloroplastic 
 hvu-r.1   123396798   15-cis-zeta-carotene isomerase, chloroplastic 
 ghi-r.1   107910439   15-cis-zeta-carotene isomerase, chloroplastic 
 ghi-r.1   107951527   15-cis-zeta-carotene isomerase, chloroplastic 
 bna-r.1   106350180   15-cis-zeta-carotene isomerase, chloroplastic 
 bna-r.1   106357937   15-cis-zeta-carotene isomerase, chloroplastic 
 sbi-r.1   110429871   15-cis-zeta-carotene isomerase, chloroplastic 
 sot-r.1   102600257   15-cis-zeta-carotene isomerase, chloroplastic 
 cit-r.1   102630760   15-cis-zeta-carotene isomerase, chloroplastic 
 bdi-r.1   100842276   15-cis-zeta-carotene isomerase, chloroplastic 
 nta-r.1   107798230   15-cis-zeta-carotene isomerase, chloroplastic 
 nta-r.1   142174772   15-cis-zeta-carotene isomerase, chloroplastic-like 

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Top 50 coexpressed genes to CHLRE_19g750247v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_19g750247v5 (cre-r.1 coexpression data)

CoexMap"5729184"


creCHLRE_19g750247v5 | Entrez gene ID : 5729184    
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 2 1 1 1 1 1 1 2 3 1 2 2 1 1 1 1 2
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre00906 [list] [network] Carotenoid biosynthesis (13 genes)
GO BP
GO:0016120 [list] [network] carotene biosynthetic process  (2 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (224 genes)  IEA  
GO MF
GO:0090471 [list] [network] 9,15,9'-tri-cis-zeta-carotene isomerase activity  (1 genes)  IEA  
Protein XP_042914209.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 6,  chlo 1,  E.R. 1,  plas 1,  cyto_plas 1  (predict for XP_042914209.1)
Subcellular
localization
TargetP
mito 7,  chlo 5  (predict for XP_042914209.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_19g750247v5
ath-u.5
for
Z-ISO
gma-u.5
for
100820507
gma-u.5
for
100793910
sly-u.5
for
Z-ISO
osa-u.5
for
4352042
zma-u.5
for
100194203
bra-r.6
for
103871859
vvi-u.5
for
100258367
ppo-u.5
for
7466321
mtr-u.5
for
11437558
mtr-u.5
for
11436315
tae-r.2
for
123110269
tae-r.2
for
123119310
tae-r.2
for
123102131
hvu-r.1
for
123396798
ghi-r.1
for
107910439
ghi-r.1
for
107951527
bna-r.1
for
106350180
bna-r.1
for
106357937
sbi-r.1
for
110429871
sot-r.1
for
102600257
cit-r.1
for
102630760
bdi-r.1
for
100842276
nta-r.1
for
107798230
nta-r.1
for
142174772


Ortholog ID: 9768
Species cre ath gma gma sly osa zma bra vvi ppo mtr mtr tae tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol CHLRE_19g750247v5 Z-ISO LOC100820507 LOC100793910 Z-ISO LOC4352042 LOC100194203 LOC103871859 LOC100258367 LOC7466321 LOC11437558 LOC11436315 LOC123110269 LOC123119310 LOC123102131 LOC123396798 LOC107910439 LOC107951527 LOC106350180 LOC106357937 LOC110429871 LOC102600257 LOC102630760 LOC100842276 LOC107798230 LOC142174772
Function* uncharacterized protein 15-cis-zeta-carotene isomerase 15-cis-zeta-carotene isomerase, chloroplastic 15-cis-zeta-carotene isomerase 15-cis-zeta-carotene isomerase 15-cis-zeta-carotene isomerase, chloroplastic 15-cis-zeta-carotene isomerase, chloroplastic 15-cis-zeta-carotene isomerase, chloroplastic 15-cis-zeta-carotene isomerase, chloroplastic 15-cis-zeta-carotene isomerase, chloroplastic 15-cis-zeta-carotene isomerase, chloroplastic 15-cis-zeta-carotene isomerase, chloroplastic 15-cis-zeta-carotene isomerase, chloroplastic 15-cis-zeta-carotene isomerase, chloroplastic 15-cis-zeta-carotene isomerase, chloroplastic 15-cis-zeta-carotene isomerase, chloroplastic 15-cis-zeta-carotene isomerase, chloroplastic 15-cis-zeta-carotene isomerase, chloroplastic 15-cis-zeta-carotene isomerase, chloroplastic 15-cis-zeta-carotene isomerase, chloroplastic 15-cis-zeta-carotene isomerase, chloroplastic 15-cis-zeta-carotene isomerase, chloroplastic 15-cis-zeta-carotene isomerase, chloroplastic 15-cis-zeta-carotene isomerase, chloroplastic 15-cis-zeta-carotene isomerase, chloroplastic 15-cis-zeta-carotene isomerase, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00906 Carotenoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 2
gma04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00906 Carotenoid biosynthesis 2
zma00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00030 Pentose phosphate pathway 3
bra00710 Carbon fixation by Calvin cycle 3
bra01200 Carbon metabolism 3
bra01230 Biosynthesis of amino acids 3
bra04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00906 Carotenoid biosynthesis 6
mtr00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00906 Carotenoid biosynthesis 3
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 3
hvu00730 Thiamine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 2
ghi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00290 Valine, leucine and isoleucine biosynthesis 4
ghi01210 2-Oxocarboxylic acid metabolism 4
ghi01230 Biosynthesis of amino acids 4
ghi00770 Pantothenate and CoA biosynthesis 3
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00480 Glutathione metabolism 2
bna00760 Nicotinate and nicotinamide metabolism 2
bna00906 Carotenoid biosynthesis 2
bna03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00480 Glutathione metabolism 2
bna00906 Carotenoid biosynthesis 2
bna03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 4
bdi00860 Porphyrin metabolism 3
bdi00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00906 Carotenoid biosynthesis 7
nta00860 Porphyrin metabolism 3
nta00270 Cysteine and methionine metabolism 2
nta00920 Sulfur metabolism 2
nta01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00906 Carotenoid biosynthesis 7
nta00860 Porphyrin metabolism 3
nta00270 Cysteine and methionine metabolism 2
nta00920 Sulfur metabolism 2
nta01200 Carbon metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5729184 837626 100820507 100793910 101253762 4352042 100194203 103871859 100258367 7466321 11437558 11436315 123110269 123119310 123102131 123396798 107910439 107951527 106350180 106357937 110429871 102600257 102630760 100842276 107798230 142174772
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