ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cre-r.1	CHLRE_02g099601v5	uncharacterized protein
cre-r.1	CHLRE_01g032550v5	uncharacterized protein
ath-u.5	AT4G31880	transcriptional regulator
ath-u.5	AT5G10950	Tudor/PWWP/MBT superfamily protein
ath-u.5	AT1G15940	Tudor/PWWP/MBT superfamily protein
gma-u.5	100818050	uncharacterized LOC100818050
sly-u.5	101246231	sister chromatid cohesion protein PDS5 homolog E
sly-u.5	101253678	sister chromatid cohesion protein PDS5 homolog D-like
osa-u.5	9266945	sister chromatid cohesion protein PDS5 homolog C
osa-u.5	4336311	sister chromatid cohesion protein PDS5 homolog C
osa-u.5	4335488	sister chromatid cohesion protein PDS5 homolog D
zma-u.5	103654690	sister chromatid cohesion protein PDS5 homolog B-B-like
zma-u.5	109939418	uncharacterized LOC109939418
zma-u.5	103646255	titin homolog
bra-r.6	103872394	biorientation of chromosomes in cell division protein 1-like 1
bra-r.6	103862094	neurofilament heavy polypeptide
vvi-u.5	100248351	sister chromatid cohesion protein PDS5 homolog C
vvi-u.5	100260975	sister chromatid cohesion protein PDS5 homolog C
ppo-u.5	7493222	sister chromatid cohesion protein PDS5 homolog D
ppo-u.5	7487059	sister chromatid cohesion protein PDS5 homolog D
ppo-u.5	7485299	sister chromatid cohesion protein PDS5 homolog C
mtr-u.5	11423336	muscle M-line assembly protein unc-89
mtr-u.5	11437017	sister chromatid cohesion protein PDS5
mtr-u.5	11442229	triadin
tae-r.2	123045941	nucleolar protein dao-5
tae-r.2	123053807	nucleolar protein dao-5
hvu-r.1	123401818	neurofilament heavy polypeptide-like
hvu-r.1	123427162	ABC transporter F family member 4-like
ghi-r.1	107906837	triadin
ghi-r.1	107906838	triadin
ghi-r.1	107953744	WASH complex subunit 2
bna-r.1	106430116	sister chromatid cohesion protein PDS5 homolog D
bna-r.1	106430760	sister chromatid cohesion protein PDS5 homolog D-like
sbi-r.1	8059675	microtubule-associated protein futsch
sbi-r.1	8060213	enolase-phosphatase E1
sbi-r.1	8071467	MATH and LRR domain-containing protein PFE0570w
sot-r.1	102591295	uncharacterized LOC102591295
sot-r.1	102596055	uncharacterized LOC102596055
sot-r.1	102606228	uncharacterized LOC102606228
cit-r.1	102614026	sister chromatid cohesion protein PDS5 homolog C-like
cit-r.1	102624143	sister chromatid cohesion protein PDS5 homolog C
bdi-r.1	100823597	muscle M-line assembly protein unc-89
bdi-r.1	100825062	uncharacterized LOC100825062
nta-r.1	107777129	sister chromatid cohesion protein PDS5 homolog C-like
nta-r.1	107787947	sister chromatid cohesion protein PDS5 homolog C
nta-r.1	107789812	sister chromatid cohesion protein PDS5 homolog D

Top 50 coexpressed genes to CHLRE_02g099601v5 (cre-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CHLRE_02g099601v5 (cre-r.1 coexpression data)

CoexMap"66052408"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

XP_042927324.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, cysk_nucl 2, plas 2, cyto 1, golg_plas 1, cyto_pero 1, E.R._plas 1

(predict for XP_042927324.1)

Subcellular
localization
TargetP

other 6

(predict for XP_042927324.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_02g099601v5	cre-r.1 for CHLRE_01g032550v5	ath-u.5 for AT4G31880	ath-u.5 for AT5G10950	ath-u.5 for AT1G15940	gma-u.5 for 100818050	sly-u.5 for 101246231	sly-u.5 for 101253678	osa-u.5 for 9266945	osa-u.5 for 4336311	osa-u.5 for 4335488	zma-u.5 for 103654690	zma-u.5 for 109939418	zma-u.5 for 103646255	bra-r.6 for 103872394	bra-r.6 for 103862094	vvi-u.5 for 100248351	vvi-u.5 for 100260975	ppo-u.5 for 7493222	ppo-u.5 for 7487059	ppo-u.5 for 7485299	mtr-u.5 for 11423336	mtr-u.5 for 11437017	mtr-u.5 for 11442229	tae-r.2 for 123045941	tae-r.2 for 123053807	hvu-r.1 for 123401818	hvu-r.1 for 123427162	ghi-r.1 for 107906837	ghi-r.1 for 107906838	ghi-r.1 for 107953744	bna-r.1 for 106430116	bna-r.1 for 106430760	sbi-r.1 for 8059675	sbi-r.1 for 8060213	sbi-r.1 for 8071467	sot-r.1 for 102591295	sot-r.1 for 102596055	sot-r.1 for 102606228	cit-r.1 for 102614026	cit-r.1 for 102624143	bdi-r.1 for 100823597	bdi-r.1 for 100825062	nta-r.1 for 107777129	nta-r.1 for 107787947	nta-r.1 for 107789812

Ortholog

Ortholog ID: 597

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

Function^*

uncharacterized protein

transcriptional regulator

Tudor/PWWP/MBT superfamily protein

muscle M-line assembly protein unc-89

uncharacterized LOC100812058

sister chromatid cohesion protein PDS5 homolog E

sister chromatid cohesion protein PDS5 homolog D-like

sister chromatid cohesion protein PDS5 homolog C

sister chromatid cohesion protein PDS5 homolog D

sister chromatid cohesion protein PDS5 homolog B-B-like

titin homolog

uncharacterized LOC103653756

neurofilament heavy polypeptide

DEAD-box ATP-dependent RNA helicase 28

cinnamoyl-CoA reductase 1

sister chromatid cohesion protein PDS5 homolog C

sister chromatid cohesion protein PDS5 homolog D

uncharacterized LOC7493403

muscle M-line assembly protein unc-89

sister chromatid cohesion protein PDS5

triadin

nucleolar protein dao-5

neurofilament heavy polypeptide

neurofilament heavy polypeptide-like

ABC transporter F family member 4-like

triadin

WASH complex subunit 2

sister chromatid cohesion protein PDS5 homolog D-like

sister chromatid cohesion protein PDS5 homolog C-like

sister chromatid cohesion protein PDS5 homolog E-like

microtubule-associated protein futsch

enolase-phosphatase E1

MATH and LRR domain-containing protein PFE0570w

uncharacterized LOC102591295

muscle M-line assembly protein unc-89

uncharacterized LOC102591624

sister chromatid cohesion protein PDS5 homolog C-like

sister chromatid cohesion protein PDS5 homolog C

muscle M-line assembly protein unc-89

uncharacterized LOC100825062

sister chromatid cohesion protein PDS5 homolog D

sister chromatid cohesion protein PDS5 homolog C-like

sister chromatid cohesion protein PDS5 homolog D

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00310	Lysine degradation	2
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03410	Base excision repair	2
osa03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03013	Nucleocytoplasmic transport	3
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03410	Base excision repair	3
ppo00010	Glycolysis / Gluconeogenesis	2
ppo01200	Carbon metabolism	2
ppo01230	Biosynthesis of amino acids	2
ppo03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	3
tae03015	mRNA surveillance pathway	3
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03020	RNA polymerase	4
ghi03013	Nucleocytoplasmic transport	2
ghi03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03013	Nucleocytoplasmic transport	2
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	2
sbi03450	Non-homologous end-joining	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03450	Non-homologous end-joining	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03250	Viral life cycle - HIV-1	2
sot03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	3
bdi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03082	ATP-dependent chromatin remodeling	3
bdi03013	Nucleocytoplasmic transport	2
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03083	Polycomb repressive complex	2

Expression

Expression pattern

Entrez Gene ID^*

66052408

5715404

829318

838164

844420

100790092

100812058

101246231

101253678

9266945

4336311

4335488

103654690

103646255

103653756

103862094

103855892

103842872

100248351

100260975

7493222

7487059

7493403

11423336

11437017

11442229

123045941

123144807

123137451

123401818

123427162

107906837

107906838

107953744

106430760

106420502

106346800

8059675

8060213

8071467

102591295

102605879

102591624

102614026

102624143

100823597

100825062

107830807

107772436

107767311

The preparation time of this page was 0.6 [sec].


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	2	3	1	2	3	3	2	2	3	3	2	2	3	2	3	3	2	2	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_02g099601v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_02g099601v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**