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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_04g218700v5   uncharacterized protein 
 ath-u.5   AT4G11175   Nucleic acid-binding, OB-fold-like protein 
 gma-u.5   INFA   translation initiation factor IF1 
 gma-u.5   100805978   translation initiation factor IF-1, chloroplastic 
 sly-u.5   infA   translation initiation factor IF1 
 sly-u.5   infA   translational initiation factor 1 
 osa-u.5   infA   translation initiation factor 1 
 bra-r.6   103833898   translation initiation factor IF-1, chloroplastic 
 vvi-u.5   infA   initiation factor 1 
 vvi-u.5   infA   translation initiation factor 1 
 ppo-u.5   7462939   translation initiation factor IF-1, chloroplastic 
 ppo-u.5   7495709   translation initiation factor IF-1, chloroplastic 
 mtr-u.5   11405552   translation initiation factor IF-1, chloroplastic 
 hvu-r.1   infA   translation initiation factor 1 
 ghi-r.1   107947071   translation initiation factor IF-1, chloroplastic 
 ghi-r.1   121211154   translation initiation factor IF-1, chloroplastic 
 bna-r.1   106439652   translation initiation factor IF-1, chloroplastic 
 bna-r.1   106422395   translation initiation factor IF-1, chloroplastic 
 sbi-r.1   infA   translation initiation factor 1 
 sot-r.1   102587284   translation initiation factor IF-1, chloroplastic 
 cit-r.1   102629092   translation initiation factor IF-1, chloroplastic 
 bdi-r.1   infA   translation initiation factor 1 
 nta-r.1   107828560   translation initiation factor IF-1, chloroplastic 
 nta-r.1   107829303   translation initiation factor IF-1, chloroplastic 

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Top 50 coexpressed genes to CHLRE_04g218700v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_04g218700v5 (cre-r.1 coexpression data)

CoexMap"66053216"


creCHLRE_04g218700v5 | Entrez gene ID : 66053216    
Species cre ath gma sly osa bra vvi ppo mtr hvu ghi bna sbi sot cit bdi nta tae zma
Paralog 1 1 2 2 1 1 2 2 1 1 2 2 1 1 1 1 2 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006413 [list] [network] translational initiation  (30 genes)  IEA  
GO CC
GO:0005829 [list] [network] cytosol  (481 genes)  IEA  
GO MF
GO:0003743 [list] [network] translation initiation factor activity  (37 genes)  IEA  
GO:0043022 [list] [network] ribosome binding  (39 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
Protein XP_042925197.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  mito 2  (predict for XP_042925197.1)
Subcellular
localization
TargetP
mito 7,  chlo 7  (predict for XP_042925197.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_04g218700v5
ath-u.5
for
AT4G11175
gma-u.5
for
INFA
gma-u.5
for
100805978
sly-u.5
for
infA
sly-u.5
for
infA
osa-u.5
for
infA
bra-r.6
for
103833898
vvi-u.5
for
infA
vvi-u.5
for
infA
ppo-u.5
for
7462939
ppo-u.5
for
7495709
mtr-u.5
for
11405552
hvu-r.1
for
infA
ghi-r.1
for
107947071
ghi-r.1
for
121211154
bna-r.1
for
106439652
bna-r.1
for
106422395
sbi-r.1
for
infA
sot-r.1
for
102587284
cit-r.1
for
102629092
bdi-r.1
for
infA
nta-r.1
for
107828560
nta-r.1
for
107829303


Ortholog ID: 9008
Species cre ath gma gma sly sly osa bra vvi vvi ppo ppo mtr hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol CHLRE_04g218700v5 AT4G11175 INFA LOC100805978 infA infA infA LOC103833898 infA infA LOC7462939 LOC7495709 LOC11405552 infA LOC107947071 LOC121211154 LOC106439652 LOC106422395 infA LOC102587284 LOC102629092 infA LOC107828560 LOC107829303
Function* uncharacterized protein Nucleic acid-binding, OB-fold-like protein translation initiation factor IF1 translation initiation factor IF-1, chloroplastic translation initiation factor IF1 translational initiation factor 1 translation initiation factor 1 translation initiation factor IF-1, chloroplastic initiation factor 1 translation initiation factor 1 translation initiation factor IF-1, chloroplastic translation initiation factor IF-1, chloroplastic translation initiation factor IF-1, chloroplastic translation initiation factor 1 translation initiation factor IF-1, chloroplastic translation initiation factor IF-1, chloroplastic translation initiation factor IF-1, chloroplastic translation initiation factor IF-1, chloroplastic translation initiation factor 1 translation initiation factor IF-1, chloroplastic translation initiation factor IF-1, chloroplastic translation initiation factor 1 translation initiation factor IF-1, chloroplastic translation initiation factor IF-1, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 10
sly03020 RNA polymerase 4
sly00190 Oxidative phosphorylation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 13
vvi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 13
vvi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 5
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 12
ppo00190 Oxidative phosphorylation 2
ppo00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00630 Glyoxylate and dicarboxylate metabolism 15
hvu00710 Carbon fixation by Calvin cycle 15
hvu01200 Carbon metabolism 15
hvu00190 Oxidative phosphorylation 5
hvu00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 16
sbi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 8
nta00350 Tyrosine metabolism 2
nta00360 Phenylalanine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 66053216 826719 547999 100805978 543687 3950377 3131394 103833898 7498632 4025134 7462939 7495709 11405552 4525109 107947071 121211154 106439652 106422395 4549086 102587284 102629092 6439856 107828560 107829303
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