ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cre-r.1	CHLRE_06g281350v5	uncharacterized protein
ath-u.5	LON1	lon protease 1
gma-u.5	100810927	lon protease homolog 1, mitochondrial
gma-u.5	100802878	lon protease homolog 1, mitochondrial
sly-u.5	101264562	lon protease homolog 1, mitochondrial-like
osa-u.5	4332601	lon protease homolog, mitochondrial
osa-u.5	9270304	lon protease homolog, mitochondrial-like
zma-u.5	103634553	lon protease homolog, mitochondrial-like
zma-u.5	732810	LON2 protein
zma-u.5	103647953	lon protease homolog, mitochondrial-like
vvi-u.5	100254508	lon protease homolog 1, mitochondrial
ppo-u.5	7478901	lon protease homolog 1, mitochondrial
ppo-u.5	18098591	lon protease homolog 1, mitochondrial
mtr-u.5	11410058	lon protease homolog 1, mitochondrial
tae-r.2	123187399	lon protease homolog, mitochondrial
tae-r.2	123051462	lon protease homolog, mitochondrial
tae-r.2	123043596	lon protease homolog, mitochondrial
hvu-r.1	123424644	lon protease homolog, mitochondrial
ghi-r.1	107933795	lon protease homolog 1, mitochondrial
ghi-r.1	107927293	lon protease homolog 1, mitochondrial
ghi-r.1	107887129	lon protease homolog 1, mitochondrial
bna-r.1	106390349	lon protease homolog 1, mitochondrial
bna-r.1	106352844	lon protease homolog 4, chloroplastic/mitochondrial
sbi-r.1	8081083	lon protease homolog, mitochondrial
sbi-r.1	8077511	lon protease homolog, mitochondrial
sot-r.1	102590267	lon protease homolog 1, mitochondrial-like
cit-r.1	102620332	lon protease homolog 1, mitochondrial
bdi-r.1	100844749	lon protease homolog, mitochondrial
nta-r.1	107809486	lon protease homolog 1, mitochondrial
nta-r.1	107796400	lon protease homolog, mitochondrial

Top 50 coexpressed genes to CHLRE_06g281350v5 (cre-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CHLRE_06g281350v5 (cre-r.1 coexpression data)

CoexMap"66053759"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0051131 [list] [network] chaperone-mediated protein complex assembly	(5 genes)	IEA
GO:0007005 [list] [network] mitochondrion organization	(43 genes)	IEA
GO:0030163 [list] [network] protein catabolic process	(223 genes)	IEA
GO:0006508 [list] [network] proteolysis	(404 genes)	IEA

GO CC

GO:0005759 [list] [network] mitochondrial matrix

(126 genes)

IEA

GO MF

GO:0004176 [list] [network] ATP-dependent peptidase activity	(22 genes)	IEA
GO:0003697 [list] [network] single-stranded DNA binding	(46 genes)	IEA
GO:0004252 [list] [network] serine-type endopeptidase activity	(85 genes)	IEA
GO:0016887 [list] [network] ATP hydrolysis activity	(290 genes)	IEA
GO:0005524 [list] [network] ATP binding	(1223 genes)	IEA

Protein

XP_042923972.1 [sequence] [blastp]

Subcellular
localization
wolf

mito 7, nucl 1, chlo 1, cysk 1, cyto_nucl 1, nucl_plas 1

(predict for XP_042923972.1)

Subcellular
localization
TargetP

mito 8

(predict for XP_042923972.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_06g281350v5	ath-u.5 for LON1	gma-u.5 for 100810927	gma-u.5 for 100802878	sly-u.5 for 101264562	osa-u.5 for 4332601	osa-u.5 for 9270304	zma-u.5 for 103634553	zma-u.5 for 732810	zma-u.5 for 103647953	vvi-u.5 for 100254508	ppo-u.5 for 7478901	ppo-u.5 for 18098591	mtr-u.5 for 11410058	tae-r.2 for 123187399	tae-r.2 for 123051462	tae-r.2 for 123043596	hvu-r.1 for 123424644	ghi-r.1 for 107933795	ghi-r.1 for 107927293	ghi-r.1 for 107887129	bna-r.1 for 106390349	bna-r.1 for 106352844	sbi-r.1 for 8081083	sbi-r.1 for 8077511	sot-r.1 for 102590267	cit-r.1 for 102620332	bdi-r.1 for 100844749	nta-r.1 for 107809486	nta-r.1 for 107796400

Ortholog

Ortholog ID: 4374

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

LON1

Function^*

uncharacterized protein

lon protease 1

lon protease homolog 1, mitochondrial

lon protease homolog 1, mitochondrial-like

lon protease homolog, mitochondrial

lon protease homolog, mitochondrial-like

LON2 protein

lon protease homolog, mitochondrial-like

lon protease homolog 4, chloroplastic/mitochondrial

lon protease homolog 1, mitochondrial

lon protease homolog, mitochondrial

lon protease homolog 1, mitochondrial

lon protease homolog, mitochondrial

lon protease homolog 1, mitochondrial-like

lon protease homolog 1, mitochondrial

lon protease homolog, mitochondrial

lon protease homolog 1, mitochondrial

lon protease homolog, mitochondrial

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04141	Protein processing in endoplasmic reticulum	4
cre03040	Spliceosome	2
cre04144	Endocytosis	2
cre03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03018	RNA degradation	4
ath04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2
gma03018	RNA degradation	2
gma03010	Ribosome	2
gma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	5
sly03018	RNA degradation	4
sly03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03018	RNA degradation	3
zma03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03018	RNA degradation	7
zma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2
bra03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03018	RNA degradation	2
vvi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	4
ppo03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03018	RNA degradation	4
mtr03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	10
tae04141	Protein processing in endoplasmic reticulum	2
tae04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	8
tae04141	Protein processing in endoplasmic reticulum	2
tae04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	10
tae04141	Protein processing in endoplasmic reticulum	2
tae04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	3
hvu03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	3
ghi00564	Glycerophospholipid metabolism	2
ghi00240	Pyrimidine metabolism	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	3
ghi00564	Glycerophospholipid metabolism	2
ghi00240	Pyrimidine metabolism	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	5
ghi00564	Glycerophospholipid metabolism	2
ghi00240	Pyrimidine metabolism	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00190	Oxidative phosphorylation	3
bna00860	Porphyrin metabolism	3
bna01240	Biosynthesis of cofactors	3
bna03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03020	RNA polymerase	2
sot01240	Biosynthesis of cofactors	2
sot03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03018	RNA degradation	3
bdi03008	Ribosome biogenesis in eukaryotes	3
bdi00230	Purine metabolism	2
bdi00670	One carbon pool by folate	2
bdi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	4
nta00010	Glycolysis / Gluconeogenesis	2
nta00030	Pentose phosphate pathway	2
nta00051	Fructose and mannose metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

66053759

832744

100810927

100802878

101264562

4332601

9270304

103634553

732810

103647953

103850014

103854689

100254508

7478901

18098591

11410058

123187399

123051462

123043596

123424644

107933795

107887129

107893893

106390349

111206418

8081083

8077511

102590267

102620332

100844749

107809486

107796400

The preparation time of this page was 2.8 [sec].


Species	cre	ath	gma	sly	osa	zma	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta	bra
Paralog	1	1	2	1	2	3	1	2	1	3	1	3	2	2	1	1	1	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_06g281350v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_06g281350v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**