ATTED-II : GeneCoexpression result

Species	Gene	Description
cre-r.1	CHLRE_12g487400v5	uncharacterized protein
cre-r.1	CHLRE_01g014751v5	uncharacterized protein
cre-r.1	CHLRE_01g014850v5	uncharacterized protein
ath-u.5	AT3G12760	defective in cullin neddylation protein
gma-u.5	100527072	DCN1-like protein 2
gma-u.5	100795410	DCN1-like protein 2
sly-u.5	101253207	uncharacterized LOC101253207
osa-u.5	4340586	uncharacterized LOC4340586
zma-u.5	100194017	Defective in cullin neddylation protein
zma-u.5	100283814	DCN1-like protein 2
bra-r.6	103870227	DCN1-like protein 2
bra-r.6	103859464	DCN1-like protein 2
vvi-u.5	100245090	uncharacterized LOC100245090
ppo-u.5	7462151	uncharacterized LOC7462151
mtr-u.5	25486918	DCN1-like protein 2
tae-r.2	123102797	DCN1-like protein 2
tae-r.2	123111003	DCN1-like protein 2
tae-r.2	123119929	DCN1-like protein 2
hvu-r.1	123452641	DCN1-like protein 2
ghi-r.1	107909152	DCN1-like protein 2
ghi-r.1	107928388	DCN1-like protein 2
bna-r.1	106452370	DCN1-like protein 2
bna-r.1	106397608	DCN1-like protein 2
bna-r.1	106389846	DCN1-like protein 2
sbi-r.1	8057888	DCN1-like protein 2
sbi-r.1	8075721	DCN1-like protein 2
sot-r.1	102603827	DCN1-like protein 1
sot-r.1	102606399	DCN1-like protein 2
cit-r.1	102630830	uncharacterized LOC102630830
bdi-r.1	100822780	DCN1-like protein 2
nta-r.1	107814137	uncharacterized LOC107814137
nta-r.1	107804497	uncharacterized LOC107804497
nta-r.1	107790124	DCN1-like protein 1

Annotation

functional annotation

KEGG

GO BP

GO:0051443 [list] [network] positive regulation of ubiquitin-protein transferase activity	(5 genes)	IEA
GO:0045116 [list] [network] protein neddylation	(6 genes)	IEA

GO CC

GO:0000151 [list] [network] ubiquitin ligase complex

(145 genes)

IEA

GO MF

GO:0097602 [list] [network] cullin family protein binding	(6 genes)	IEA
GO:0031624 [list] [network] ubiquitin conjugating enzyme binding	(9 genes)	IEA
GO:0032182 [list] [network] ubiquitin-like protein binding	(54 genes)	IEA

Protein

XP_042918073.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, mito 3, nucl 2, cyto_pero 2, cyto_E.R. 2

(predict for XP_042918073.1)

Subcellular
localization
TargetP

other 7

(predict for XP_042918073.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_12g487400v5	cre-r.1 for CHLRE_01g014751v5	cre-r.1 for CHLRE_01g014850v5	ath-u.5 for AT3G12760	gma-u.5 for 100527072	gma-u.5 for 100795410	sly-u.5 for 101253207	osa-u.5 for 4340586	zma-u.5 for 100194017	zma-u.5 for 100283814	bra-r.6 for 103870227	bra-r.6 for 103859464	vvi-u.5 for 100245090	ppo-u.5 for 7462151	mtr-u.5 for 25486918	tae-r.2 for 123102797	tae-r.2 for 123111003	tae-r.2 for 123119929	hvu-r.1 for 123452641	ghi-r.1 for 107909152	ghi-r.1 for 107928388	bna-r.1 for 106452370	bna-r.1 for 106397608	bna-r.1 for 106389846	sbi-r.1 for 8057888	sbi-r.1 for 8075721	sot-r.1 for 102603827	sot-r.1 for 102606399	cit-r.1 for 102630830	bdi-r.1 for 100822780	nta-r.1 for 107814137	nta-r.1 for 107804497	nta-r.1 for 107790124

Ortholog

Ortholog ID: 5105

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

Function^*

uncharacterized protein

defective in cullin neddylation protein

DCN1-like protein 2

uncharacterized LOC101253207

uncharacterized LOC4340586

Defective in cullin neddylation protein

DCN1-like protein 2

uncharacterized LOC100245090

uncharacterized LOC7462151

DCN1-like protein 2

DCN1-like protein 1

DCN1-like protein 2

uncharacterized LOC102630830

DCN1-like protein 2

uncharacterized LOC107804497

DCN1-like protein 1

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03050	Proteasome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03050	Proteasome	12
cre04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	3
ath04712	Circadian rhythm - plant	3
ath03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	2
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	7
gma04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04144	Endocytosis	4
osa04141	Protein processing in endoplasmic reticulum	2
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	4
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3
ppo03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03050	Proteasome	7
tae04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00900	Terpenoid backbone biosynthesis	3
tae04144	Endocytosis	2
tae03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00561	Glycerolipid metabolism	3
tae00564	Glycerophospholipid metabolism	3
tae04144	Endocytosis	3
tae03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04120	Ubiquitin mediated proteolysis	3
hvu04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	2
ghi04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03082	ATP-dependent chromatin remodeling	4
bna03083	Polycomb repressive complex	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	6
bna04136	Autophagy - other	6
bna04382	Cornified envelope formation	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00270	Cysteine and methionine metabolism	2
sbi00330	Arginine and proline metabolism	2
sbi00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03083	Polycomb repressive complex	2
sot04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	2
nta04120	Ubiquitin mediated proteolysis	2
nta04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	2
nta04120	Ubiquitin mediated proteolysis	2
nta04141	Protein processing in endoplasmic reticulum	2
nta03020	RNA polymerase	2
nta03420	Nucleotide excision repair	2

Expression

Expression pattern

Entrez Gene ID^*

66055406

66051995

5715095

820458

100527072

100795410

101253207

4340586

100194017

100283814

103870227

103859464

100245090

7462151

25486918

123102797

123111003

123119929

123452641

107909152

107928388

106389846

106356790

8057888

8075721

102603827

102606399

102630830

100822780

107804497

107790124

107787528

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to CHLRE_12g487400v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_12g487400v5 (cre-r.1 coexpression data)


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	3	1	2	1	1	2	2	1	1	1	3	1	2	3	2	2	1	1	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_12g487400v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_12g487400v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**