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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g508450v5   uncharacterized protein 
 ath-u.5   UBP16   ubiquitin-specific protease 16 
 ath-u.5   UBP17   ubiquitin-specific protease 17 
 gma-u.5   100815856   ubiquitin carboxyl-terminal hydrolase 16 
 gma-u.5   100811058   ubiquitin carboxyl-terminal hydrolase 17 
 gma-u.5   100795674   ubiquitin carboxyl-terminal hydrolase 17 
 sly-u.5   101252175   ubiquitin carboxyl-terminal hydrolase 16 
 osa-u.5   4345840   ubiquitin carboxyl-terminal hydrolase 17 
 osa-u.5   4347307   ubiquitin carboxyl-terminal hydrolase 17 
 zma-u.5   103634170   ubiquitin carboxyl-terminal hydrolase 18 
 zma-u.5   100277781   uncharacterized LOC100277781 
 zma-u.5   103643160   ubiquitin carboxyl-terminal hydrolase 17-like 
 bra-r.6   103861492   ubiquitin carboxyl-terminal hydrolase 16 
 bra-r.6   103862275   ubiquitin carboxyl-terminal hydrolase 16 
 bra-r.6   103873979   ubiquitin carboxyl-terminal hydrolase 17 
 vvi-u.5   100257420   ubiquitin carboxyl-terminal hydrolase 16 
 vvi-u.5   100853437   ubiquitin carboxyl-terminal hydrolase 17 
 ppo-u.5   7486557   ubiquitin carboxyl-terminal hydrolase 17 
 ppo-u.5   7461817   ubiquitin carboxyl-terminal hydrolase 16 
 mtr-u.5   11405494   ubiquitin carboxyl-terminal hydrolase 17 
 mtr-u.5   11429833   ubiquitin carboxyl-terminal hydrolase 16 
 mtr-u.5   11437133   ubiquitin carboxyl-terminal hydrolase 17 
 tae-r.2   123170007   ubiquitin carboxyl-terminal hydrolase 19 
 hvu-r.1   123398886   ubiquitin carboxyl-terminal hydrolase 17-like 
 hvu-r.1   123407832   ubiquitin carboxyl-terminal hydrolase 17-like 
 ghi-r.1   107910219   ubiquitin carboxyl-terminal hydrolase 17 
 ghi-r.1   107951695   ubiquitin carboxyl-terminal hydrolase 17 
 ghi-r.1   107951413   ubiquitin carboxyl-terminal hydrolase 16 
 bna-r.1   106347976   ubiquitin carboxyl-terminal hydrolase 17 
 bna-r.1   106442105   ubiquitin carboxyl-terminal hydrolase 16-like 
 bna-r.1   106440788   ubiquitin carboxyl-terminal hydrolase 16-like 
 sbi-r.1   8063721   ubiquitin carboxyl-terminal hydrolase 16 
 sbi-r.1   8056909   ubiquitin carboxyl-terminal hydrolase 17 
 sot-r.1   102606234   ubiquitin carboxyl-terminal hydrolase 17 
 cit-r.1   102607676   ubiquitin carboxyl-terminal hydrolase 17 
 cit-r.1   102625250   ubiquitin carboxyl-terminal hydrolase 16 
 bdi-r.1   100840139   ubiquitin carboxyl-terminal hydrolase 19 
 nta-r.1   107809628   ubiquitin carboxyl-terminal hydrolase 16 
 nta-r.1   107796986   ubiquitin carboxyl-terminal hydrolase 16 

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Top 50 coexpressed genes to CHLRE_12g508450v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g508450v5 (cre-r.1 coexpression data)

CoexMap"66055532"


creCHLRE_12g508450v5 | Entrez gene ID : 66055532    
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 2 3 1 2 3 3 2 2 3 1 2 3 3 2 1 2 1 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (1927 genes)  IEA  
Protein XP_042918160.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  cyto 1,  nucl 1,  mito 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_042918160.1)
Subcellular
localization
TargetP
other 7  (predict for XP_042918160.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g508450v5
ath-u.5
for
UBP16
ath-u.5
for
UBP17
gma-u.5
for
100815856
gma-u.5
for
100811058
gma-u.5
for
100795674
sly-u.5
for
101252175
osa-u.5
for
4345840
osa-u.5
for
4347307
zma-u.5
for
103634170
zma-u.5
for
100277781
zma-u.5
for
103643160
bra-r.6
for
103861492
bra-r.6
for
103862275
bra-r.6
for
103873979
vvi-u.5
for
100257420
vvi-u.5
for
100853437
ppo-u.5
for
7486557
ppo-u.5
for
7461817
mtr-u.5
for
11405494
mtr-u.5
for
11429833
mtr-u.5
for
11437133
tae-r.2
for
123170007
hvu-r.1
for
123398886
hvu-r.1
for
123407832
ghi-r.1
for
107910219
ghi-r.1
for
107951695
ghi-r.1
for
107951413
bna-r.1
for
106347976
bna-r.1
for
106442105
bna-r.1
for
106440788
sbi-r.1
for
8063721
sbi-r.1
for
8056909
sot-r.1
for
102606234
cit-r.1
for
102607676
cit-r.1
for
102625250
bdi-r.1
for
100840139
nta-r.1
for
107809628
nta-r.1
for
107796986


Ortholog ID: 3124
Species cre ath ath gma gma gma sly osa osa zma zma zma bra bra bra vvi vvi ppo ppo mtr mtr mtr tae hvu hvu ghi ghi ghi bna bna bna sbi sbi sot cit cit bdi nta nta
Symbol CHLRE_12g508450v5 UBP16 UBP17 LOC100811058 LOC100795674 LOC100792437 LOC101252175 LOC4345840 LOC4347307 LOC103634170 LOC100277781 LOC103643160 LOC103861492 LOC103862275 LOC103873979 LOC100257420 LOC100853437 LOC7486557 LOC7461817 LOC11405494 LOC11429833 LOC11437133 LOC123155582 LOC123398886 LOC123407832 LOC107910219 LOC107951695 LOC107951413 LOC106442105 LOC106440788 LOC106396521 LOC8063721 LOC8056909 LOC102606234 LOC102607676 LOC102625250 LOC100840139 LOC107809628 LOC107796986
Function* uncharacterized protein ubiquitin-specific protease 16 ubiquitin-specific protease 17 ubiquitin carboxyl-terminal hydrolase 17 ubiquitin carboxyl-terminal hydrolase 17 ubiquitin carboxyl-terminal hydrolase 17 ubiquitin carboxyl-terminal hydrolase 16 ubiquitin carboxyl-terminal hydrolase 17 ubiquitin carboxyl-terminal hydrolase 17 ubiquitin carboxyl-terminal hydrolase 18 uncharacterized LOC100277781 ubiquitin carboxyl-terminal hydrolase 17-like ubiquitin carboxyl-terminal hydrolase 16 ubiquitin carboxyl-terminal hydrolase 16 ubiquitin carboxyl-terminal hydrolase 17 ubiquitin carboxyl-terminal hydrolase 16 ubiquitin carboxyl-terminal hydrolase 17 ubiquitin carboxyl-terminal hydrolase 17 ubiquitin carboxyl-terminal hydrolase 16 ubiquitin carboxyl-terminal hydrolase 17 ubiquitin carboxyl-terminal hydrolase 16 ubiquitin carboxyl-terminal hydrolase 17 ubiquitin carboxyl-terminal hydrolase 17 ubiquitin carboxyl-terminal hydrolase 17-like ubiquitin carboxyl-terminal hydrolase 17-like ubiquitin carboxyl-terminal hydrolase 17 ubiquitin carboxyl-terminal hydrolase 17 ubiquitin carboxyl-terminal hydrolase 16 ubiquitin carboxyl-terminal hydrolase 16-like ubiquitin carboxyl-terminal hydrolase 16-like ubiquitin carboxyl-terminal hydrolase 16 ubiquitin carboxyl-terminal hydrolase 16 ubiquitin carboxyl-terminal hydrolase 17 ubiquitin carboxyl-terminal hydrolase 17 ubiquitin carboxyl-terminal hydrolase 17 ubiquitin carboxyl-terminal hydrolase 16 ubiquitin carboxyl-terminal hydrolase 19 ubiquitin carboxyl-terminal hydrolase 16 ubiquitin carboxyl-terminal hydrolase 16
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04016 MAPK signaling pathway - plant 4
ath04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
gma04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04016 MAPK signaling pathway - plant 2
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04144 Endocytosis 4
vvi04141 Protein processing in endoplasmic reticulum 3
vvi03040 Spliceosome 2
vvi04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 5
ppo00514 Other types of O-glycan biosynthesis 2
ppo03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 2
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 2
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04136 Autophagy - other 4
ghi03018 RNA degradation 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04136 Autophagy - other 4
ghi03018 RNA degradation 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00190 Oxidative phosphorylation 3
sbi04145 Phagosome 3
sbi00541 Biosynthesis of various nucleotide sugars 2
sbi03060 Protein export 2
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00520 Amino sugar and nucleotide sugar metabolism 2
sbi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04142 Lysosome 4
sot04144 Endocytosis 3
sot00970 Aminoacyl-tRNA biosynthesis 2
sot05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 4
bdi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 3
nta02010 ABC transporters 2
nta04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 3
nta02010 ABC transporters 2
nta04136 Autophagy - other 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 66055532 828558 836670 100811058 100795674 100792437 101252175 4345840 4347307 103634170 100277781 103643160 103861492 103862275 103873979 100257420 100853437 7486557 7461817 11405494 11429833 11437133 123155582 123398886 123407832 107910219 107951695 107951413 106442105 106440788 106396521 8063721 8056909 102606234 102607676 102625250 100840139 107809628 107796986
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