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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g532650v5   uncharacterized protein 
 ath-u.5   AT5G51340   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.5   100780498   sister chromatid cohesion protein SCC4 
 gma-u.5   100777199   sister chromatid cohesion protein SCC4 
 sly-u.5   101249677   sister chromatid cohesion protein SCC4 
 osa-u.5   4335536   sister chromatid cohesion protein SCC4 
 zma-u.5   100192084   uncharacterized LOC100192084 
 bra-r.6   103844391   sister chromatid cohesion protein SCC4 
 vvi-u.5   100253529   sister chromatid cohesion protein SCC4 
 ppo-u.5   7494645   sister chromatid cohesion protein SCC4 
 mtr-u.5   11430059   sister chromatid cohesion protein SCC4 
 mtr-u.5   25496479   sister chromatid cohesion protein SCC4 
 tae-r.2   123053066   sister chromatid cohesion protein SCC4 
 tae-r.2   123188970   sister chromatid cohesion protein SCC4 
 tae-r.2   123045231   sister chromatid cohesion protein SCC4 
 hvu-r.1   123426456   sister chromatid cohesion protein SCC4 
 ghi-r.1   107963815   sister chromatid cohesion protein SCC4 
 ghi-r.1   107927106   sister chromatid cohesion protein SCC4 
 bna-r.1   106406098   sister chromatid cohesion protein SCC4 
 bna-r.1   125593473   sister chromatid cohesion protein SCC4 
 sbi-r.1   8069436   uncharacterized LOC8069436 
 sot-r.1   102584451   uncharacterized LOC102584451 
 cit-r.1   102626523   sister chromatid cohesion protein SCC4 
 bdi-r.1   100845559   sister chromatid cohesion protein SCC4 
 nta-r.1   107781999   sister chromatid cohesion protein SCC4-like 
 nta-r.1   107768693   sister chromatid cohesion protein SCC4 

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Top 50 coexpressed genes to CHLRE_12g532650v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g532650v5 (cre-r.1 coexpression data)

CoexMap"66055654"


creCHLRE_12g532650v5 | Entrez gene ID : 66055654    
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 2 1 1 1 1 1 1 2 3 1 2 2 1 1 1 1 2
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0034088 [list] [network] maintenance of mitotic sister chromatid cohesion  (2 genes)  IEA  
GO:0007064 [list] [network] mitotic sister chromatid cohesion  (15 genes)  IEA  
GO CC
GO:0032116 [list] [network] SMC loading complex  (3 genes)  IEA  
GO:0000785 [list] [network] chromatin  (219 genes)  IEA  
GO MF
GO:0003690 [list] [network] double-stranded DNA binding  (175 genes)  IEA  
Protein XP_042918686.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 4,  cyto 1,  plas 1,  vacu 1,  cyto_pero 1,  cyto_E.R. 1  (predict for XP_042918686.1)
Subcellular
localization
TargetP
other 5,  scret 5  (predict for XP_042918686.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g532650v5
ath-u.5
for
AT5G51340
gma-u.5
for
100780498
gma-u.5
for
100777199
sly-u.5
for
101249677
osa-u.5
for
4335536
zma-u.5
for
100192084
bra-r.6
for
103844391
vvi-u.5
for
100253529
ppo-u.5
for
7494645
mtr-u.5
for
11430059
mtr-u.5
for
25496479
tae-r.2
for
123053066
tae-r.2
for
123188970
tae-r.2
for
123045231
hvu-r.1
for
123426456
ghi-r.1
for
107963815
ghi-r.1
for
107927106
bna-r.1
for
106406098
bna-r.1
for
125593473
sbi-r.1
for
8069436
sot-r.1
for
102584451
cit-r.1
for
102626523
bdi-r.1
for
100845559
nta-r.1
for
107781999
nta-r.1
for
107768693


Ortholog ID: 9731
Species cre ath gma gma sly osa zma bra vvi ppo mtr mtr tae tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol CHLRE_12g532650v5 AT5G51340 LOC100780498 LOC100777199 LOC101249677 LOC4335536 LOC100192084 LOC103844391 LOC100253529 LOC7494645 LOC11430059 LOC25496479 LOC123053066 LOC123188970 LOC123045231 LOC123426456 LOC107963815 LOC107927106 LOC106406098 LOC125593473 LOC8069436 LOC102584451 LOC102626523 LOC100845559 LOC107781999 LOC107768693
Function* uncharacterized protein Tetratricopeptide repeat (TPR)-like superfamily protein sister chromatid cohesion protein SCC4 sister chromatid cohesion protein SCC4 sister chromatid cohesion protein SCC4 sister chromatid cohesion protein SCC4 uncharacterized LOC100192084 sister chromatid cohesion protein SCC4 sister chromatid cohesion protein SCC4 sister chromatid cohesion protein SCC4 sister chromatid cohesion protein SCC4 sister chromatid cohesion protein SCC4 sister chromatid cohesion protein SCC4 sister chromatid cohesion protein SCC4 sister chromatid cohesion protein SCC4 sister chromatid cohesion protein SCC4 sister chromatid cohesion protein SCC4 sister chromatid cohesion protein SCC4 sister chromatid cohesion protein SCC4 sister chromatid cohesion protein SCC4 uncharacterized LOC8069436 uncharacterized LOC102584451 sister chromatid cohesion protein SCC4 sister chromatid cohesion protein SCC4 sister chromatid cohesion protein SCC4-like sister chromatid cohesion protein SCC4
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03410 Base excision repair 3
cre03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03015 mRNA surveillance pathway 2
osa03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 3
zma03083 Polycomb repressive complex 2
zma03040 Spliceosome 2
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 3
ppo03040 Spliceosome 3
ppo03420 Nucleotide excision repair 2
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
bna03040 Spliceosome 3
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 4
bna03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 4
bdi03015 mRNA surveillance pathway 2
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
nta03460 Fanconi anemia pathway 2
nta03450 Non-homologous end-joining 2
nta03082 ATP-dependent chromatin remodeling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 66055654 835208 100780498 100777199 101249677 4335536 100192084 103844391 100253529 7494645 11430059 25496479 123053066 123188970 123045231 123426456 107963815 107927106 106406098 125593473 8069436 102584451 102626523 100845559 107781999 107768693
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