ATTED-II : GeneCoexpression result

Species	Gene	Description
cre-r.1	CHLRE_16g693750v5	uncharacterized protein
ath-u.5	FIE	Transducin/WD40 repeat-like superfamily protein
gma-u.5	100785120	polycomb group protein FIE1
gma-u.5	100795288	polycomb group protein FIE1
sly-u.5	FIE	fertilization-independent endosperm protein
osa-u.5	4344620	polycomb group protein FIE1-like
zma-u.5	542075	fertilization independent endosperm 1
zma-u.5	542076	fertilization independent endosperm 2
bra-r.6	103835815	polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM
bra-r.6	103869280	polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM
vvi-u.5	100246903	polycomb group protein FIE1
ppo-u.5	18095896	polycomb group protein FIE1
mtr-u.5	25482354	polycomb group protein FIE1
hvu-r.1	123409904	polycomb group protein FIE1
ghi-r.1	107920781	polycomb group protein FIE1
ghi-r.1	107895196	polycomb group protein FIE1
bna-r.1	106365963	polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM-like
bna-r.1	106383006	polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM
bna-r.1	106433782	polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM
sbi-r.1	8067799	polycomb group protein FIE2
sot-r.1	102577673	fertilization-independent endosperm protein
cit-r.1	102631462	polycomb group protein FIE1
bdi-r.1	100828611	polycomb group protein FIE2
bdi-r.1	100838165	polycomb group protein FIE2
nta-r.1	107766652	polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM-like
nta-r.1	107794471	polycomb group protein FIE1

Annotation

functional annotation

KEGG

GO BP

GO:0000122 [list] [network] negative regulation of transcription by RNA polymerase II

(12 genes)

IEA

GO CC

GO:0035098 [list] [network] ESC/E(Z) complex

(2 genes)

IEA

GO MF

GO:0031491 [list] [network] nucleosome binding	(17 genes)	IEA
GO:0005515 [list] [network] protein binding	(1927 genes)	IEA

Protein

XP_042915313.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, nucl 4, cyto 1, mito 1, extr 1

(predict for XP_042915313.1)

Subcellular
localization
TargetP

mito 5

(predict for XP_042915313.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_16g693750v5	ath-u.5 for FIE	gma-u.5 for 100785120	gma-u.5 for 100795288	sly-u.5 for FIE	osa-u.5 for 4344620	zma-u.5 for 542075	zma-u.5 for 542076	bra-r.6 for 103835815	bra-r.6 for 103869280	vvi-u.5 for 100246903	ppo-u.5 for 18095896	mtr-u.5 for 25482354	hvu-r.1 for 123409904	ghi-r.1 for 107920781	ghi-r.1 for 107895196	bna-r.1 for 106365963	bna-r.1 for 106383006	bna-r.1 for 106433782	sbi-r.1 for 8067799	sot-r.1 for 102577673	cit-r.1 for 102631462	bdi-r.1 for 100828611	bdi-r.1 for 100838165	nta-r.1 for 107766652	nta-r.1 for 107794471

Ortholog

Ortholog ID: 4082

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

FIE

FIE

Function^*

uncharacterized protein

Transducin/WD40 repeat-like superfamily protein

polycomb group protein FIE1

FIE

fertilization-independent endosperm protein

polycomb group protein FIE1-like

fertilization independent endosperm 1

fertilization independent endosperm 2

polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM

polycomb group protein FIE1

polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM-like

polycomb group protein FIE2

fertilization-independent endosperm protein

polycomb group protein FIE1

polycomb group protein FIE2

polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM-like

polycomb group protein FIE1

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03030	DNA replication	3
cre03410	Base excision repair	3
cre03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00970	Aminoacyl-tRNA biosynthesis	4
ath03040	Spliceosome	2
ath03082	ATP-dependent chromatin remodeling	2
ath03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03250	Viral life cycle - HIV-1	2
gma03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03018	RNA degradation	3
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03083	Polycomb repressive complex	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00380	Tryptophan metabolism	2
zma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03440	Homologous recombination	2
zma03013	Nucleocytoplasmic transport	2
zma03083	Polycomb repressive complex	2
zma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03050	Proteasome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03018	RNA degradation	2
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	4
mtr03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	5
tae03018	RNA degradation	3
tae03083	Polycomb repressive complex	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	2
hvu03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03083	Polycomb repressive complex	2
ghi03013	Nucleocytoplasmic transport	2
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03083	Polycomb repressive complex	2
ghi03013	Nucleocytoplasmic transport	2
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03083	Polycomb repressive complex	4
bna03013	Nucleocytoplasmic transport	2
bna04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03083	Polycomb repressive complex	4
bna03013	Nucleocytoplasmic transport	2
bna04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	2
sbi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	3
bdi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00260	Glycine, serine and threonine metabolism	2
nta00460	Cyanoamino acid metabolism	2
nta00630	Glyoxylate and dicarboxylate metabolism	2
nta00670	One carbon pool by folate	2
nta01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03083	Polycomb repressive complex	2
nta03020	RNA polymerase	2
nta03420	Nucleotide excision repair	2
nta04141	Protein processing in endoplasmic reticulum	2

Expression

Expression pattern

Entrez Gene ID^*

66056835

821622

100795288

100127417

100136877

4344620

542075

542076

103869280

100246903

18095896

25482354

123167651

123409904

107920781

107895196

106365963

106453896

8067799

102577673

102631462

100828611

100838165

107766652

107794471

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to CHLRE_16g693750v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_16g693750v5 (cre-r.1 coexpression data)


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	hvu	ghi	bna	sbi	sot	cit	bdi	nta	tae
Paralog	1	1	2	1	1	2	2	1	1	1	1	2	3	1	1	1	2	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_16g693750v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_16g693750v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**