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Orthologous genes in OrthoFinder**

Species Gene Description
 nta-r.1   107768020   protein PHOTOPERIODIC CONTROL OF HYPOCOTYL 1 
 nta-r.1   107762693   protein PHOTOPERIODIC CONTROL OF HYPOCOTYL 1 
 nta-r.1   107785806   protein PHOTOPERIODIC CONTROL OF HYPOCOTYL 1 
 nta-r.1   107808647   protein PHOTOPERIODIC CONTROL OF HYPOCOTYL 1 
 sly-u.5   101263256   F-box protein At2g16365 
 sly-u.5   101251228   uncharacterized LOC101251228 
 sot-r.1   102591212   uncharacterized LOC102591212 
 sot-r.1   102584744   F-box protein At2g16365-like 
 ath-u.5   AT2G16365   F-box family protein 
 ath-u.5   AT4G34550   F-box protein 
 gma-u.5   100784228   uncharacterized LOC100784228 
 gma-u.5   100795495   F-box protein At2g16365 
 bra-r.6   103860448   F-box protein At2g16365 
 bra-r.6   103846044   F-box protein At2g16365 
 vvi-u.5   100243604   uncharacterized LOC100243604 
 ppo-u.5   7456366   uncharacterized LOC7456366 
 ppo-u.5   7461229   uncharacterized LOC7461229 
 mtr-u.5   11417143   uncharacterized LOC11417143 
 ghi-r.1   107928803   uncharacterized LOC107928803 
 ghi-r.1   107945030   uncharacterized LOC107945030 
 bna-r.1   106406028   F-box protein At2g16365 
 bna-r.1   106439849   F-box protein At2g16365-like 
 bna-r.1   106433684   F-box protein At2g16365 
 cit-r.1   102628277   uncharacterized LOC102628277 

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Top 50 coexpressed genes to 107768020 (nta-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107768020 (nta-r.1 coexpression data)

CoexMap"107768020"


ntaLOC107768020 | Entrez gene ID : 107768020      
Species nta sly sot ath gma bra vvi ppo mtr ghi bna cit sbi osa tae hvu zma cre bdi
Paralog 4 2 2 2 2 2 1 2 1 2 3 1 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010099 [list] [network] regulation of photomorphogenesis  (10 genes)  IEA  
GO CC
GO MF
Protein XP_016442609.1 [sequence] [blastp]
XP_016442610.1 [sequence] [blastp]
XP_016442611.1 [sequence] [blastp]
XP_075104296.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  nucl_plas 4,  cyto 1,  plas 1  (predict for XP_016442609.1)
nucl 6,  nucl_plas 4,  cyto 1,  plas 1  (predict for XP_016442610.1)
nucl 6,  nucl_plas 4,  cyto 1,  plas 1  (predict for XP_016442611.1)
nucl 7,  nucl_plas 5,  plas 1  (predict for XP_075104296.1)
Subcellular
localization
TargetP
other 8  (predict for XP_016442609.1)
other 8  (predict for XP_016442610.1)
other 8  (predict for XP_016442611.1)
other 8  (predict for XP_075104296.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

nta-r.1
for
107768020
nta-r.1
for
107762693
nta-r.1
for
107785806
nta-r.1
for
107808647
sly-u.5
for
101263256
sly-u.5
for
101251228
sot-r.1
for
102591212
sot-r.1
for
102584744
ath-u.5
for
AT2G16365
ath-u.5
for
AT4G34550
gma-u.5
for
100784228
gma-u.5
for
100795495
bra-r.6
for
103860448
bra-r.6
for
103846044
vvi-u.5
for
100243604
ppo-u.5
for
7456366
ppo-u.5
for
7461229
mtr-u.5
for
11417143
ghi-r.1
for
107928803
ghi-r.1
for
107945030
bna-r.1
for
106406028
bna-r.1
for
106439849
bna-r.1
for
106433684
cit-r.1
for
102628277


Ortholog ID: 8873
Species nta nta nta sly sly sot sot ath ath gma gma bra bra vvi ppo ppo mtr ghi ghi bna bna bna cit
Symbol LOC107762693 LOC107785806 LOC107808647 LOC101263256 LOC101251228 LOC102591212 LOC102584744 AT2G16365 AT4G34550 LOC100784228 LOC100795495 LOC103860448 LOC103846044 LOC100243604 LOC7456366 LOC7461229 LOC11417143 LOC107928803 LOC107945030 LOC106406028 LOC106433684 LOC106410776 LOC102628277
Function* protein PHOTOPERIODIC CONTROL OF HYPOCOTYL 1 protein PHOTOPERIODIC CONTROL OF HYPOCOTYL 1 protein PHOTOPERIODIC CONTROL OF HYPOCOTYL 1 F-box protein At2g16365 uncharacterized LOC101251228 uncharacterized LOC102591212 F-box protein At2g16365-like F-box family protein F-box protein uncharacterized LOC100784228 F-box protein At2g16365 F-box protein At2g16365 F-box protein At2g16365 uncharacterized LOC100243604 uncharacterized LOC7456366 uncharacterized LOC7461229 uncharacterized LOC11417143 uncharacterized LOC107928803 uncharacterized LOC107945030 F-box protein At2g16365 F-box protein At2g16365 F-box protein At2g16365 uncharacterized LOC102628277
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 2
nta00240 Pyrimidine metabolism 2
nta01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00906 Carotenoid biosynthesis 2
sly04075 Plant hormone signal transduction 2
sly04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 4
ppo04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04712 Circadian rhythm - plant 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107762693 107785806 107808647 101263256 101251228 102591212 102584744 816133 829606 100784228 100795495 103860448 103846044 100243604 7456366 7461229 11417143 107928803 107945030 106406028 106433684 106410776 102628277
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