ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
nta-r.1	107775442	uncharacterized LOC107775442
nta-r.1	107776501	uncharacterized LOC107776501
nta-r.1	107761486	uncharacterized LOC107761486
nta-r.1	107827603	uncharacterized LOC107827603
sly-u.5	101251959	uncharacterized LOC101251959
sly-u.5	101254858	uncharacterized LOC101254858
sly-u.5	101268130	uncharacterized LOC101268130
sot-r.1	102603580	poly(A) polymerase I-like
sot-r.1	102605830	uncharacterized LOC102605830
sot-r.1	102592062	uncharacterized LOC102592062
ath-u.5	AT2G17580	Polynucleotide adenylyltransferase family protein
ath-u.5	AT3G48830	tRNA nucleotidyltransferase/polyA polymerase family protein
ath-u.5	AT5G23690	Polynucleotide adenylyltransferase family protein
gma-u.5	100790939	poly(A) polymerase I
gma-u.5	100794882	uncharacterized LOC100794882
gma-u.5	100801072	CCA-adding enzyme
bra-r.6	103874114	uncharacterized LOC103874114
bra-r.6	103874237	poly(A) polymerase I
bra-r.6	103838989	poly(A) polymerase I
vvi-u.5	104879172	uncharacterized LOC104879172
vvi-u.5	100259104	uncharacterized LOC100259104
ppo-u.5	7457572	uncharacterized LOC7457572
ppo-u.5	7454593	uncharacterized LOC7454593
ppo-u.5	7480453	uncharacterized LOC7480453
mtr-u.5	25491148	CCA-adding enzyme
mtr-u.5	11435625	CCA-adding enzyme
mtr-u.5	11405782	uncharacterized LOC11405782
ghi-r.1	107946608	poly(A) polymerase I
ghi-r.1	107955619	uncharacterized LOC107955619
ghi-r.1	107946881	CCA-adding enzyme
bna-r.1	106447053	uncharacterized LOC106447053
bna-r.1	BNAC03G74530D	uncharacterized BNAC03G74530D
bna-r.1	106367292	poly(A) polymerase I
cit-r.1	102608253	uncharacterized LOC102608253
cit-r.1	102627987	uncharacterized LOC102627987
osa-u.5	4335699	poly(A) polymerase I
osa-u.5	4331511	uncharacterized LOC4331511
zma-u.5	100502264	uncharacterized LOC100502264
zma-u.5	100382483	Polynucleotide adenylyltransferase family protein
tae-r.2	123045332	poly(A) polymerase I
tae-r.2	123053170	poly(A) polymerase I
tae-r.2	123093606	poly(A) polymerase I
hvu-r.1	123449775	poly(A) polymerase I-like
hvu-r.1	123426571	poly(A) polymerase I
sbi-r.1	8061429	poly(A) polymerase I
sbi-r.1	8072012	poly(A) polymerase I
bdi-r.1	100829983	poly(A) polymerase I
bdi-r.1	100821667	uncharacterized LOC100821667
cre-r.1	CHLRE_14g625950v5	uncharacterized protein

Top 50 coexpressed genes to 107775442 (nta-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107775442 (nta-r.1 coexpression data)

CoexMap"107775442"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006396 [list] [network] RNA processing

(1135 genes)

IEA

GO CC

GO MF

GO:0016779 [list] [network] nucleotidyltransferase activity	(219 genes)	IEA
GO:0003723 [list] [network] RNA binding	(2607 genes)	IEA

Protein

XP_016450657.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, mito 3, vacu 1, cyto_mito 1

(predict for XP_016450657.1)

Subcellular
localization
TargetP

mito 8

(predict for XP_016450657.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	nta-r.1 for 107775442	nta-r.1 for 107776501	nta-r.1 for 107761486	nta-r.1 for 107827603	sly-u.5 for 101251959	sly-u.5 for 101254858	sly-u.5 for 101268130	sot-r.1 for 102603580	sot-r.1 for 102605830	sot-r.1 for 102592062	ath-u.5 for AT2G17580	ath-u.5 for AT3G48830	ath-u.5 for AT5G23690	gma-u.5 for 100790939	gma-u.5 for 100794882	gma-u.5 for 100801072	bra-r.6 for 103874114	bra-r.6 for 103874237	bra-r.6 for 103838989	vvi-u.5 for 104879172	vvi-u.5 for 100259104	ppo-u.5 for 7457572	ppo-u.5 for 7454593	ppo-u.5 for 7480453	mtr-u.5 for 25491148	mtr-u.5 for 11435625	mtr-u.5 for 11405782	ghi-r.1 for 107946608	ghi-r.1 for 107955619	ghi-r.1 for 107946881	bna-r.1 for 106447053	bna-r.1 for BNAC03G74530D	bna-r.1 for 106367292	cit-r.1 for 102608253	cit-r.1 for 102627987	osa-u.5 for 4335699	osa-u.5 for 4331511	zma-u.5 for 100502264	zma-u.5 for 100382483	tae-r.2 for 123045332	tae-r.2 for 123053170	tae-r.2 for 123093606	hvu-r.1 for 123449775	hvu-r.1 for 123426571	sbi-r.1 for 8061429	sbi-r.1 for 8072012	bdi-r.1 for 100829983	bdi-r.1 for 100821667	cre-r.1 for CHLRE_14g625950v5

Ortholog

Ortholog ID: 2125

Species

nta

sly

sot

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized LOC107761486

uncharacterized LOC107827603

uncharacterized LOC107812113

uncharacterized LOC101251959

uncharacterized LOC101268130

uncharacterized LOC101265314

poly(A) polymerase I-like

uncharacterized LOC102605830

uncharacterized LOC102592062

Polynucleotide adenylyltransferase family protein

uncharacterized LOC100794882

CCA-adding enzyme

poly(A) polymerase I

uncharacterized LOC103874114

poly(A) polymerase I

uncharacterized LOC104879172

uncharacterized LOC100259104

uncharacterized LOC7457572

uncharacterized LOC7454593

uncharacterized LOC7496538

CCA-adding enzyme

uncharacterized LOC11405782

poly(A) polymerase I

CCA-adding enzyme

uncharacterized LOC107955089

uncharacterized BNAC03G74530D

poly(A) polymerase I

uncharacterized LOC102608253

uncharacterized LOC102627987

poly(A) polymerase I

uncharacterized LOC4331511

uncharacterized LOC100502264

Polynucleotide adenylyltransferase family protein

poly(A) polymerase I

poly(A) polymerase I-like

poly(A) polymerase I

uncharacterized LOC100821667

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00010	Glycolysis / Gluconeogenesis	4
nta00710	Carbon fixation by Calvin cycle	2
nta01200	Carbon metabolism	2
nta01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	4
nta03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	6
sly03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03018	RNA degradation	4
sot03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	5
gma03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	2
bra03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03013	Nucleocytoplasmic transport	2
mtr03020	RNA polymerase	2
mtr03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00970	Aminoacyl-tRNA biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00790	Folate biosynthesis	2
cit01240	Biosynthesis of cofactors	2
cit04122	Sulfur relay system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00051	Fructose and mannose metabolism	2
zma00520	Amino sugar and nucleotide sugar metabolism	2
zma00541	Biosynthesis of various nucleotide sugars	2
zma01240	Biosynthesis of cofactors	2
zma01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00970	Aminoacyl-tRNA biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01240	Biosynthesis of cofactors	3
hvu00860	Porphyrin metabolism	2
hvu00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00970	Aminoacyl-tRNA biosynthesis	4

Expression

Expression pattern

Entrez Gene ID^*

107761486

107827603

107812113

101251959

101268130

101265314

102603580

102605830

102592062

816265

832434

839702

100794882

100801072

100796540

103874114

103874237

103838989

104879172

100259104

7457572

7454593

7496538

25491148

11435625

11405782

107946608

107946881

107955089

106380568

106367292

106348313

102608253

102627987

4335699

4331511

100502264

100382483

123093606

123189082

123105810

123449775

123426571

8061429

8072012

100829983

100821667

5718292

The preparation time of this page was 0.2 [sec].


Species	nta	sly	sot	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	3	3	3	3	2	3	3	3	3	2	2	2	3	2	2	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107775442 (nta-r.1 coexpression data)

Top 50 enrichment test to 107775442 (nta-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**