ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
nta-r.1	107792794	rapid alkalinization factor-like
nta-r.1	107779632	rapid alkalinization factor-like
nta-r.1	107761273	rapid alkalinization factor-like
nta-r.1	107811318	rapid alkalinization factor
sly-u.5	101263243	rapid alkalinization factor
sly-u.5	101251815	rapid alkalinization factor
sly-u.5	101250742	rapid alkalinization factor
sot-r.1	102600777	rapid alkalinization factor
sot-r.1	102599209	rapid alkalinization factor
sot-r.1	102582329	rapid alkalinization factor-like
ath-u.5	RALF23	rapid alkalinization factor 23
ath-u.5	RALFL22	ralf-like 22
ath-u.5	RALF1	rapid alkalinization factor 1
gma-u.5	100799158	rapid alkalinization factor
gma-u.5	100500513	uncharacterized LOC100500513
bra-r.6	103837169	protein RALF-like 22
bra-r.6	103869748	rapid alkalinization factor 23
bra-r.6	103870818	protein RALF-like 22
vvi-u.5	100261311	protein RALF-like 33
vvi-u.5	100263186	uncharacterized LOC100263186
vvi-u.5	100264106	rapid alkalinization factor
ppo-u.5	7481736	rapid alkalinization factor
ppo-u.5	7491312	protein RALF-like 1
ppo-u.5	18111031	protein RALF-like 33
mtr-u.5	11413171	protein RALF-like 33
mtr-u.5	11433312	protein RALF-like 33
ghi-r.1	107916156	protein RALF-like 33
ghi-r.1	121209340	protein RALF-like 33
bna-r.1	106440031	protein RALF-like 33
bna-r.1	106345645	protein RALF-like 22
bna-r.1	106345371	rapid alkalinization factor 23-like
cit-r.1	102612136	protein RALF-like 33
cit-r.1	102617093	protein RALF-like 33
cit-r.1	102618657	rapid alkalinization factor 23
osa-u.5	4326020	protein RALF-like 33
osa-u.5	4352443	rapid alkalinization factor
zma-u.5	100280769	RALF
zma-u.5	100284232	uncharacterized LOC100284232
tae-r.2	123119800	rapid alkalinization factor
tae-r.2	123110802	rapid alkalinization factor
tae-r.2	123102618	rapid alkalinization factor
hvu-r.1	123398207	protein RALF-like 33
hvu-r.1	123446479	rapid alkalinization factor-like
sbi-r.1	8057913	rapid alkalinization factor
sbi-r.1	8066312	protein RALF-like 22
bdi-r.1	100827910	rapid alkalinization factor
bdi-r.1	100832761	rapid alkalinization factor 23

Top 50 coexpressed genes to 107792794 (nta-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107792794 (nta-r.1 coexpression data)

CoexMap"107792794"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0019722 [list] [network] calcium-mediated signaling

(32 genes)

IEA

GO CC

GO:0009506 [list] [network] plasmodesma

(97 genes)

IEA

GO MF

Protein

XP_016470518.1 [sequence] [blastp]

Subcellular
localization
wolf

extr 9, vacu 1

(predict for XP_016470518.1)

Subcellular
localization
TargetP

scret 9

(predict for XP_016470518.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	nta-r.1 for 107792794	nta-r.1 for 107779632	nta-r.1 for 107761273	nta-r.1 for 107811318	sly-u.5 for 101263243	sly-u.5 for 101251815	sly-u.5 for 101250742	sot-r.1 for 102600777	sot-r.1 for 102599209	sot-r.1 for 102582329	ath-u.5 for RALF23	ath-u.5 for RALFL22	ath-u.5 for RALF1	gma-u.5 for 100799158	gma-u.5 for 100500513	bra-r.6 for 103837169	bra-r.6 for 103869748	bra-r.6 for 103870818	vvi-u.5 for 100261311	vvi-u.5 for 100263186	vvi-u.5 for 100264106	ppo-u.5 for 7481736	ppo-u.5 for 7491312	ppo-u.5 for 18111031	mtr-u.5 for 11413171	mtr-u.5 for 11433312	ghi-r.1 for 107916156	ghi-r.1 for 121209340	bna-r.1 for 106440031	bna-r.1 for 106345645	bna-r.1 for 106345371	cit-r.1 for 102612136	cit-r.1 for 102617093	cit-r.1 for 102618657	osa-u.5 for 4326020	osa-u.5 for 4352443	zma-u.5 for 100280769	zma-u.5 for 100284232	tae-r.2 for 123119800	tae-r.2 for 123110802	tae-r.2 for 123102618	hvu-r.1 for 123398207	hvu-r.1 for 123446479	sbi-r.1 for 8057913	sbi-r.1 for 8066312	bdi-r.1 for 100827910	bdi-r.1 for 100832761

Ortholog

Ortholog ID: 1081

Species

nta

sly

sot

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

Symbol

RALF23

RALF1

RALFL33

Function^*

rapid alkalinization factor-like

rapid alkalinization factor

rapid alkalinization factor-like

rapid alkalinization factor 23

rapid alkalinization factor 1

ralf-like 33

uncharacterized LOC100500513

protein RALF-like 33

rapid alkalinization factor 23

protein RALF-like 22

protein RALF-like 33

uncharacterized LOC100263186

rapid alkalinization factor

protein RALF-like 1

protein RALF-like 33

rapid alkalinization factor 23

protein RALF-like 33

protein RALF-like 1

protein RALF-like 33

rapid alkalinization factor 23

protein RALF-like 33

rapid alkalinization factor

RALF

uncharacterized LOC100284232

rapid alkalinization factor

protein RALF-like 33

rapid alkalinization factor-like

rapid alkalinization factor

protein RALF-like 22

rapid alkalinization factor

rapid alkalinization factor 23

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00940	Phenylpropanoid biosynthesis	7
nta00941	Flavonoid biosynthesis	7
nta00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00940	Phenylpropanoid biosynthesis	7
nta00941	Flavonoid biosynthesis	7
nta00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00053	Ascorbate and aldarate metabolism	4
nta00520	Amino sugar and nucleotide sugar metabolism	4
nta01240	Biosynthesis of cofactors	4
nta01250	Biosynthesis of nucleotide sugars	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	4
sly00940	Phenylpropanoid biosynthesis	3
sly00360	Phenylalanine metabolism	2
sly00941	Flavonoid biosynthesis	2
sly00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00940	Phenylpropanoid biosynthesis	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00940	Phenylpropanoid biosynthesis	2
gma03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00053	Ascorbate and aldarate metabolism	5
bra00520	Amino sugar and nucleotide sugar metabolism	5
bra01240	Biosynthesis of cofactors	5
bra01250	Biosynthesis of nucleotide sugars	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01250	Biosynthesis of nucleotide sugars	6
vvi00520	Amino sugar and nucleotide sugar metabolism	4
vvi00541	Biosynthesis of various nucleotide sugars	4
vvi00053	Ascorbate and aldarate metabolism	3
vvi01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	2
ppo00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04517	IgSF CAM signaling	2
mtr05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04145	Phagosome	2
ghi04148	Efferocytosis	2
ghi04517	IgSF CAM signaling	2
ghi04518	Integrin signaling	2
ghi04620	Toll-like receptor signaling pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00600	Sphingolipid metabolism	3
cit01250	Biosynthesis of nucleotide sugars	2
cit01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00940	Phenylpropanoid biosynthesis	2
osa04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00500	Starch and sucrose metabolism	3
hvu00460	Cyanoamino acid metabolism	2
hvu00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01230	Biosynthesis of amino acids	6
hvu00400	Phenylalanine, tyrosine and tryptophan biosynthesis	3
hvu00270	Cysteine and methionine metabolism	3
hvu00620	Pyruvate metabolism	2
hvu00630	Glyoxylate and dicarboxylate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00053	Ascorbate and aldarate metabolism	3
sbi00520	Amino sugar and nucleotide sugar metabolism	3
sbi01240	Biosynthesis of cofactors	3
sbi01250	Biosynthesis of nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00500	Starch and sucrose metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

107792794

107779632

107761273

101263243

101251815

101250742

102600777

102599209

102582329

820907

839389

827260

100500513

100780330

103869748

103870818

103860800

100261311

100263186

100264106

7481736

7491312

18111031

11413171

11433312

107908414

107896679

121214486

106439441

106445827

106399567

102612136

102617093

102618657

4326020

4352443

100280769

100284232

123119800

123110802

123102618

123398207

123446479

8057913

8066312

100827910

100832761

The preparation time of this page was 0.1 [sec].


Species	nta	sly	sot	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	3	3	2	3	3	3	2	2	3	3	2	2	3	2	2	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107792794 (nta-r.1 coexpression data)

Top 50 enrichment test to 107792794 (nta-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**