ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
nta-r.1	107820424	uncharacterized LOC107820424
nta-r.1	107825690	uncharacterized LOC107825690
nta-r.1	107813489	uncharacterized LOC107813489
nta-r.1	107790879	uncharacterized LOC107790879
sly-u.5	101243891	uncharacterized LOC101243891
sly-u.5	101250239	uncharacterized LOC101250239
sly-u.5	101251016	uncharacterized LOC101251016
sot-r.1	102594140	nucleolin 1
sot-r.1	102594473	uncharacterized LOC102594473
sot-r.1	102594924	nucleolin-like
ath-u.5	AT2G25670	uncharacterized protein
ath-u.5	AT4G32610	copper ion binding protein
gma-u.5	100813817	high mobility group nucleosome-binding domain-containing protein 5
gma-u.5	100810419	nucleolar protein 12
gma-u.5	100788744	uncharacterized LOC100788744
bra-r.6	103850752	troponin T, slow skeletal muscle
bra-r.6	103862188	DNA ligase 1
vvi-u.5	100262887	chromatin modification-related protein EAF7
vvi-u.5	100245830	uncharacterized LOC100245830
ppo-u.5	7495739	uncharacterized LOC7495739
ppo-u.5	7462960	uncharacterized LOC7462960
mtr-u.5	11437072	eukaryotic translation initiation factor 5B
mtr-u.5	11436629	eukaryotic translation initiation factor 5B
ghi-r.1	121217432	nucleolin
ghi-r.1	121212605	transcriptional regulator ATRX homolog
ghi-r.1	107942484	stress response protein NST1
bna-r.1	106423374	DNA ligase 1-like
bna-r.1	106361131	cilia- and flagella-associated protein 251
cit-r.1	102627754	uncharacterized LOC102627754
cit-r.1	102627654	uncharacterized LOC102627654
osa-u.5	4323877	uncharacterized protein DDB_G0286299
osa-u.5	4337976	uncharacterized LOC4337976
zma-u.5	100191191	uncharacterized LOC100191191
zma-u.5	100193889	uncharacterized LOC100193889
zma-u.5	100282684	uncharacterized LOC100282684
tae-r.2	123180701	FK506-binding protein 5
tae-r.2	123077532	nuclear ubiquitous casein and cyclin-dependent kinase substrate 1
hvu-r.1	123426992	FK506-binding protein 5-like
hvu-r.1	123442984	nuclear ubiquitous casein and cyclin-dependent kinase substrate 1-like
sbi-r.1	8072721	nucleolin
sbi-r.1	8056519	brain acid soluble protein 1 homolog
bdi-r.1	100840308	aspartic and glutamic acid-rich protein
bdi-r.1	100837268	protein IWS1 homolog
bdi-r.1	100820906	DNA ligase 1
cre-r.1	CHLRE_12g507150v5	uncharacterized protein

Top 50 coexpressed genes to 107820424 (nta-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107820424 (nta-r.1 coexpression data)

CoexMap"107820424"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

XP_016502196.1 [sequence] [blastp]
XP_016502197.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 8, chlo 1, cyto 1, plas 1, cyto_plas 1	(predict for XP_016502196.1)
nucl 8, chlo 1, cyto 1, plas 1, cyto_plas 1	(predict for XP_016502197.1)

Subcellular
localization
TargetP

other 6, chlo 5	(predict for XP_016502196.1)
other 6, chlo 5	(predict for XP_016502197.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	nta-r.1 for 107820424	nta-r.1 for 107825690	nta-r.1 for 107813489	nta-r.1 for 107790879	sly-u.5 for 101243891	sly-u.5 for 101250239	sly-u.5 for 101251016	sot-r.1 for 102594140	sot-r.1 for 102594473	sot-r.1 for 102594924	ath-u.5 for AT2G25670	ath-u.5 for AT4G32610	gma-u.5 for 100813817	gma-u.5 for 100810419	gma-u.5 for 100788744	bra-r.6 for 103850752	bra-r.6 for 103862188	vvi-u.5 for 100262887	vvi-u.5 for 100245830	ppo-u.5 for 7495739	ppo-u.5 for 7462960	mtr-u.5 for 11437072	mtr-u.5 for 11436629	ghi-r.1 for 121217432	ghi-r.1 for 121212605	ghi-r.1 for 107942484	bna-r.1 for 106423374	bna-r.1 for 106361131	cit-r.1 for 102627754	cit-r.1 for 102627654	osa-u.5 for 4323877	osa-u.5 for 4337976	zma-u.5 for 100191191	zma-u.5 for 100193889	zma-u.5 for 100282684	tae-r.2 for 123180701	tae-r.2 for 123077532	hvu-r.1 for 123426992	hvu-r.1 for 123442984	sbi-r.1 for 8072721	sbi-r.1 for 8056519	bdi-r.1 for 100840308	bdi-r.1 for 100837268	bdi-r.1 for 100820906	cre-r.1 for CHLRE_12g507150v5

Ortholog

Ortholog ID: 1837

Species

nta

sly

sot

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized LOC107825690

uncharacterized LOC107813489

uncharacterized LOC107790879

uncharacterized LOC101243891

uncharacterized LOC101250239

uncharacterized LOC101251016

nucleolin 1

nucleolin-like

troponin T, fast skeletal muscle-like

uncharacterized protein

copper ion binding protein

nucleolar protein 12

uncharacterized LOC100788744

general transcription factor IIF subunit 1

troponin T, slow skeletal muscle

DNA ligase 1

chromatin modification-related protein EAF7

uncharacterized LOC100245830

uncharacterized LOC7495739

uncharacterized LOC7462960

eukaryotic translation initiation factor 5B

stress response protein NST1

nucleolin

stress response protein NST1

cilia- and flagella-associated protein 251

claspin

uncharacterized LOC102627754

uncharacterized LOC102627654

uncharacterized protein DDB_G0286299

uncharacterized LOC4337976

uncharacterized LOC100191191

uncharacterized LOC100193889

uncharacterized LOC100282684

nuclear ubiquitous casein and cyclin-dependent kinase substrate 1

skin secretory protein xP2

serrate RNA effector molecule homolog

FK506-binding protein 5-like

nuclear ubiquitous casein and cyclin-dependent kinase substrate 1-like

nucleolin

brain acid soluble protein 1 homolog

aspartic and glutamic acid-rich protein

protein IWS1 homolog

DNA ligase 1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	2
nta03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	4
sot03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	5
sot03013	Nucleocytoplasmic transport	2
sot03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	2
ath03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03015	mRNA surveillance pathway	2
gma00030	Pentose phosphate pathway	2
gma00480	Glutathione metabolism	2
gma01200	Carbon metabolism	2
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03050	Proteasome	3
vvi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03022	Basal transcription factors	2
mtr03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03022	Basal transcription factors	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00330	Arginine and proline metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00071	Fatty acid degradation	10
osa01212	Fatty acid metabolism	9
osa04146	Peroxisome	7
osa01200	Carbon metabolism	6
osa00592	alpha-Linolenic acid metabolism	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	4
zma03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00260	Glycine, serine and threonine metabolism	2
zma00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
zma01230	Biosynthesis of amino acids	2
zma03040	Spliceosome	2
zma03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	4
hvu03015	mRNA surveillance pathway	3
hvu00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03050	Proteasome	7
sbi04141	Protein processing in endoplasmic reticulum	2
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04146	Peroxisome	5
bdi00071	Fatty acid degradation	4
bdi01212	Fatty acid metabolism	4
bdi00410	beta-Alanine metabolism	3
bdi00592	alpha-Linolenic acid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04142	Lysosome	2
bdi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	2
bdi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre01230	Biosynthesis of amino acids	2

Expression

Expression pattern

Entrez Gene ID^*

107825690

107813489

107790879

101243891

101250239

101251016

102594140

102594924

102583652

817108

829396

100810419

100788744

100777431

103850752

103862188

100262887

100245830

7495739

7462960

11437072

11436629

107942484

107933014

107909203

106361131

106406934

102627754

102627654

4323877

4337976

100191191

100193889

100282684

123069002

123144332

123136888

123426992

123442984

8072721

8056519

100840308

100837268

100820906

5716495

The preparation time of this page was 0.1 [sec].


Species	nta	sly	sot	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	3	2	3	2	2	2	2	3	2	2	2	3	2	2	2	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107820424 (nta-r.1 coexpression data)

Top 50 enrichment test to 107820424 (nta-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**