ATTED-II : GeneCoexpression result

Orthologous genes in OrthoFinder^**

Species	Gene	Description
osa-e.1	4339017	probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic
osa-u.5	4339017	probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic
osa-r.6	4339017	probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic
osa-m.8	4339017	probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic
tae-r.2	123182268	probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic
tae-r.2	123136061	probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic
tae-r.2	123059115	probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic
hvu-r.1	123445402	probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic
bdi-r.1	100839815	probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic
zma-u.5	100282823	riboflavin biosynthesis protein ribAB
sbi-r.1	8072551	probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic
ath-u.5	RIBA3	monofunctional riboflavin biosynthesis protein RIBA 3
gma-u.5	100786573	monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic
sly-u.5	101263281	monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic
bra-r.6	103851554	monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic
vvi-u.5	100267389	monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic
ppo-u.5	7465134	monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic
mtr-u.5	11412806	monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic
ghi-r.1	107950290	monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic
bna-r.1	106385473	monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic
bna-r.1	106441124	monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic
sot-r.1	102586687	monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic
cit-r.1	102620026	monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic
nta-r.1	107831087	monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic
nta-r.1	107792734	monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic-like

Annotation

functional annotation

KEGG

osa00740 [list] [network] Riboflavin metabolism (19 genes)

osa00790 [list] [network] Folate biosynthesis (28 genes)

osa01240 [list] [network] Biosynthesis of cofactors (253 genes)

GO BP

GO:0009231 [list] [network] riboflavin biosynthetic process

(12 genes)

IEA

GO CC

GO:0005829 [list] [network] cytosol

(929 genes)

IEA

GO MF

GO:0003935 [list] [network] GTP cyclohydrolase II activity	(3 genes)	IEA
GO:0008686 [list] [network] 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	(3 genes)	IEA

Protein

NP_001389496.1 [sequence] [blastp]
NP_001389497.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 8, nucl 1	(predict for NP_001389496.1)
chlo 3, plas 2, nucl 1, E.R. 1, chlo_mito 1, cyto_plas 1	(predict for NP_001389497.1)

Subcellular
localization
TargetP

mito 3	(predict for NP_001389496.1)
other 8	(predict for NP_001389497.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	osa-e.1 for 4339017	osa-u.5 for 4339017	osa-r.6 for 4339017	osa-m.8 for 4339017	tae-r.2 for 123182268	tae-r.2 for 123136061	tae-r.2 for 123059115	hvu-r.1 for 123445402	bdi-r.1 for 100839815	zma-u.5 for 100282823	sbi-r.1 for 8072551	ath-u.5 for RIBA3	gma-u.5 for 100786573	sly-u.5 for 101263281	bra-r.6 for 103851554	vvi-u.5 for 100267389	ppo-u.5 for 7465134	mtr-u.5 for 11412806	ghi-r.1 for 107950290	bna-r.1 for 106385473	bna-r.1 for 106441124	sot-r.1 for 102586687	cit-r.1 for 102620026	nta-r.1 for 107831087	nta-r.1 for 107792734

Ortholog

Ortholog ID: 11453

Species

osa

tae

hvu

bdi

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

RIBA3

Function^*

probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic

riboflavin biosynthesis protein ribAB

probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic

monofunctional riboflavin biosynthesis protein RIBA 3

monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic

monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic-like

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00710	Carbon fixation by Calvin cycle	2
osa01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00740	Riboflavin metabolism	3
tae00790	Folate biosynthesis	3
tae01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00630	Glyoxylate and dicarboxylate metabolism	6
tae01200	Carbon metabolism	6
tae04146	Peroxisome	6
tae00740	Riboflavin metabolism	3
tae00790	Folate biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00630	Glyoxylate and dicarboxylate metabolism	4
tae01200	Carbon metabolism	4
tae04146	Peroxisome	4
tae00740	Riboflavin metabolism	3
tae00790	Folate biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00710	Carbon fixation by Calvin cycle	3
bdi01200	Carbon metabolism	3
bdi00630	Glyoxylate and dicarboxylate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00195	Photosynthesis	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00010	Glycolysis / Gluconeogenesis	2
gma00030	Pentose phosphate pathway	2
gma00051	Fructose and mannose metabolism	2
gma00710	Carbon fixation by Calvin cycle	2
gma01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00260	Glycine, serine and threonine metabolism	3
bra00630	Glyoxylate and dicarboxylate metabolism	3
bra01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00195	Photosynthesis	4
ghi00260	Glycine, serine and threonine metabolism	2
ghi00470	D-Amino acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00195	Photosynthesis	4
bna00040	Pentose and glucuronate interconversions	3
bna00740	Riboflavin metabolism	2
bna00790	Folate biosynthesis	2
bna01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00040	Pentose and glucuronate interconversions	7
bna00051	Fructose and mannose metabolism	3
bna00740	Riboflavin metabolism	2
bna00790	Folate biosynthesis	2
bna01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot01200	Carbon metabolism	6
sot00195	Photosynthesis	4
sot00710	Carbon fixation by Calvin cycle	4
sot00630	Glyoxylate and dicarboxylate metabolism	3
sot00260	Glycine, serine and threonine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00010	Glycolysis / Gluconeogenesis	6
nta00030	Pentose phosphate pathway	6
nta00051	Fructose and mannose metabolism	6
nta00710	Carbon fixation by Calvin cycle	6
nta01200	Carbon metabolism	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00010	Glycolysis / Gluconeogenesis	6
nta00030	Pentose phosphate pathway	6
nta00051	Fructose and mannose metabolism	6
nta00710	Carbon fixation by Calvin cycle	6
nta01200	Carbon metabolism	6

Expression

Expression pattern

Entrez Gene ID^*

4339017

123182268

123136061

123059115

123445402

100839815

100282823

8072551

836096

100786573

101263281

103851554

100267389

7465134

11412806

107950290

106385473

106441124

102586687

102620026

107831087

107792734

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 4339017 (osa-e.1 coexpression data)

Top 50 enrichment test to 4339017 (osa-e.1 coexpression data)


Species	osa	tae	hvu	bdi	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	4	3	1	1	1	1	1	1	1	1	1	1	1	1	2	1	1	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 4339017 (osa-e.1 coexpression data)

Top 50 enrichment test to 4339017 (osa-e.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**