ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.4.hor	CCP1	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-u.5	CCP1	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-r.7	CCP1	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-m.9	CCP1	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-e.2	CCP1	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-m.4.bio	CCP1	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-m.4.lig	CCP1	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-m.4.str	CCP1	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-m.4.tis	CCP1	P-loop containing nucleoside triphosphate hydrolases superfamily protein
bra-r.6	103857538	katanin p60 ATPase-containing subunit A-like 2
bna-r.1	125609357	katanin p60 ATPase-containing subunit A-like 2
bna-r.1	106447490	katanin p60 ATPase-containing subunit A-like 2
bna-r.1	106437824	katanin p60 ATPase-containing subunit A-like 2
ghi-r.1	107942574	katanin p60 ATPase-containing subunit A-like 2
ghi-r.1	107913789	katanin p60 ATPase-containing subunit A-like 2
ghi-r.1	107901885	katanin p60 ATPase-containing subunit A-like 2
cit-r.1	102613510	uncharacterized LOC102613510
gma-u.5	100813164	katanin p60 ATPase-containing subunit A-like 2
gma-u.5	100794098	katanin p60 ATPase-containing subunit A-like 2
vvi-u.5	100253260	uncharacterized LOC100253260
ppo-u.5	18103250	uncharacterized LOC18103250
ppo-u.5	7470183	uncharacterized LOC7470183
mtr-u.5	11407257	katanin p60 ATPase-containing subunit A-like 2
sly-u.5	101249324	uncharacterized LOC101249324
sot-r.1	102585839	katanin p60 ATPase-containing subunit A-like 2
nta-r.1	107825935	uncharacterized LOC107825935
nta-r.1	107803103	uncharacterized LOC107803103
nta-r.1	107799024	uncharacterized LOC107799024
osa-u.5	4325146	uncharacterized LOC4325146
zma-u.5	100382416	uncharacterized LOC100382416
zma-u.5	100273044	uncharacterized LOC100273044
tae-r.2	123061914	katanin p60 ATPase-containing subunit A-like 2
tae-r.2	123079215	katanin p60 ATPase-containing subunit A-like 2
tae-r.2	123062097	katanin p60 ATPase-containing subunit A-like 2
hvu-r.1	123444443	katanin p60 ATPase-containing subunit A-like 2
hvu-r.1	123444078	katanin p60 ATPase-containing subunit A-like 2
sbi-r.1	8068000	katanin p60 ATPase-containing subunit A-like 2
sbi-r.1	8072095	katanin p60 ATPase-containing subunit A-like 2
bdi-r.1	100845693	katanin p60 ATPase-containing subunit A-like 2
bdi-r.1	100831953	katanin p60 ATPase-containing subunit A-like 2
cre-r.1	CHLRE_10g446400v5	uncharacterized protein

Top 50 coexpressed genes to CCP1 (ath-m.4.hor coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CCP1 (ath-m.4.hor coexpression data)

CoexMap"818020"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005783 [list] [network] endoplasmic reticulum	(897 genes)	HDA
GO:0005886 [list] [network] plasma membrane	(2598 genes)	ISM

GO MF

Protein

NP_565791.1 [sequence] [blastp]
NP_973600.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 6, nucl 2, mito 1, plas 1, pero 1, mito_plas 1	(predict for NP_565791.1)
cyto 6, nucl 1, plas 1, nucl_plas 1	(predict for NP_973600.1)

Subcellular
localization
TargetP

other 7	(predict for NP_565791.1)
other 8	(predict for NP_973600.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.hor for CCP1	ath-u.5 for CCP1	ath-r.7 for CCP1	ath-m.9 for CCP1	ath-e.2 for CCP1	ath-m.4.bio for CCP1	ath-m.4.lig for CCP1	ath-m.4.str for CCP1	ath-m.4.tis for CCP1	bra-r.6 for 103857538	bna-r.1 for 125609357	bna-r.1 for 106447490	bna-r.1 for 106437824	ghi-r.1 for 107942574	ghi-r.1 for 107913789	ghi-r.1 for 107901885	cit-r.1 for 102613510	gma-u.5 for 100813164	gma-u.5 for 100794098	vvi-u.5 for 100253260	ppo-u.5 for 18103250	ppo-u.5 for 7470183	mtr-u.5 for 11407257	sly-u.5 for 101249324	sot-r.1 for 102585839	nta-r.1 for 107825935	nta-r.1 for 107803103	nta-r.1 for 107799024	osa-u.5 for 4325146	zma-u.5 for 100382416	zma-u.5 for 100273044	tae-r.2 for 123061914	tae-r.2 for 123079215	tae-r.2 for 123062097	hvu-r.1 for 123444443	hvu-r.1 for 123444078	sbi-r.1 for 8068000	sbi-r.1 for 8072095	bdi-r.1 for 100845693	bdi-r.1 for 100831953	cre-r.1 for CHLRE_10g446400v5

Ortholog

Ortholog ID: 4880

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

CCP1

Function^*

P-loop containing nucleoside triphosphate hydrolases superfamily protein

katanin p60 ATPase-containing subunit A-like 2

uncharacterized LOC102613510

katanin p60 ATPase-containing subunit A-like 2

uncharacterized LOC100253260

uncharacterized LOC18103250

uncharacterized LOC7470183

katanin p60 ATPase-containing subunit A-like 2

uncharacterized LOC101249324

katanin p60 ATPase-containing subunit A-like 2

uncharacterized LOC107825935

uncharacterized LOC107803103

uncharacterized LOC107767825

uncharacterized LOC4325146

uncharacterized LOC100382416

uncharacterized LOC100273044

katanin p60 ATPase-containing subunit A-like 2

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00620	Pyruvate metabolism	4
ath00900	Terpenoid backbone biosynthesis	3
ath00280	Valine, leucine and isoleucine degradation	2
ath00650	Butanoate metabolism	2
ath00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04016	MAPK signaling pathway - plant	2
ghi04075	Plant hormone signal transduction	2
ghi03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04016	MAPK signaling pathway - plant	2
ghi04075	Plant hormone signal transduction	2
ghi03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04016	MAPK signaling pathway - plant	2
ghi04075	Plant hormone signal transduction	2
ghi03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00053	Ascorbate and aldarate metabolism	2
gma00480	Glutathione metabolism	2
gma00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00620	Pyruvate metabolism	2
gma04075	Plant hormone signal transduction	2
gma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00100	Steroid biosynthesis	2
ppo03015	mRNA surveillance pathway	2
ppo04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00010	Glycolysis / Gluconeogenesis	2
mtr01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00100	Steroid biosynthesis	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00100	Steroid biosynthesis	9
sot00996	Biosynthesis of various alkaloids	3
sot00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	3
nta00100	Steroid biosynthesis	2
nta00230	Purine metabolism	2
nta03020	RNA polymerase	2
nta03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01212	Fatty acid metabolism	5
osa01200	Carbon metabolism	4
osa00061	Fatty acid biosynthesis	4
osa01240	Biosynthesis of cofactors	4
osa00620	Pyruvate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00900	Terpenoid backbone biosynthesis	5
zma04141	Protein processing in endoplasmic reticulum	3
zma00280	Valine, leucine and isoleucine degradation	3
zma00650	Butanoate metabolism	3
zma00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae01200	Carbon metabolism	4
tae00071	Fatty acid degradation	3
tae00280	Valine, leucine and isoleucine degradation	3
tae00310	Lysine degradation	3
tae00380	Tryptophan metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae01200	Carbon metabolism	7
tae00280	Valine, leucine and isoleucine degradation	6
tae00310	Lysine degradation	6
tae00380	Tryptophan metabolism	6
tae00620	Pyruvate metabolism	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00100	Steroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04145	Phagosome	5
bdi04517	IgSF CAM signaling	5
bdi04814	Motor proteins	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00062	Fatty acid elongation	2
bdi01040	Biosynthesis of unsaturated fatty acids	2
bdi01212	Fatty acid metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

818020

103857538

125609357

106447490

106396489

107942574

107913789

107901885

102613510

100813164

100794098

100253260

18103250

7470183

11407257

101249324

102585839

107825935

107803103

107767825

4325146

100382416

100273044

123079215

123062097

123070826

123444443

123444078

8068000

8072095

100845693

100831953

5724022

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Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	9	1	3	3	1	2	1	2	1	1	1	3	1	2	3	2	2	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CCP1 (ath-m.4.hor coexpression data)

Top 50 enrichment test to CCP1 (ath-m.4.hor coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**