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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.hor   PTAC12   plastid transcriptionally active 12 
 ath-u.5   PTAC12   plastid transcriptionally active 12 
 ath-r.7   PTAC12   plastid transcriptionally active 12 
 ath-m.9   PTAC12   plastid transcriptionally active 12 
 ath-e.2   PTAC12   plastid transcriptionally active 12 
 ath-m.4.bio   PTAC12   plastid transcriptionally active 12 
 ath-m.4.lig   PTAC12   plastid transcriptionally active 12 
 ath-m.4.str   PTAC12   plastid transcriptionally active 12 
 ath-m.4.tis   PTAC12   plastid transcriptionally active 12 
 bna-r.1   125609351   protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic-like 
 bna-r.1   106447486   protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic 
 bna-r.1   106396188   protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic 
 ghi-r.1   107960741   protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic 
 ghi-r.1   107905983   protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic 
 cit-r.1   102620035   protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic 
 gma-u.5   100798194   protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic 
 vvi-u.5   100251522   protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic 
 ppo-u.5   7470815   protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic 
 mtr-u.5   11438320   protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic 
 sly-u.5   101055518   Hop-interacting protein THI030 
 sot-r.1   102587072   protein PLASTID TRANSCRIPTIONALLY ACTIVE 12 
 nta-r.1   107794404   protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic 
 nta-r.1   107778483   protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic 
 osa-u.5   4325601   protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic-like 
 zma-u.5   100275546   plastid transcriptionally active chromosome 12-like protein 
 tae-r.2   123079300   protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic 
 tae-r.2   123070917   protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic 
 tae-r.2   123062184   protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic 
 hvu-r.1   123444516   protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic 
 sbi-r.1   8072126   protein PLASTID TRANSCRIPTIONALLY ACTIVE 12 
 bdi-r.1   100840007   protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic 

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Top 50 coexpressed genes to PTAC12 (ath-m.4.hor coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PTAC12 (ath-m.4.hor coexpression data)

CoexMap"818029"


athPTAC12 | Entrez gene ID : 818029      
Species ath bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi bra cre
Paralog 9 3 2 1 1 1 1 1 1 1 2 1 1 3 1 1 1 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0090228 [list] [network] positive regulation of red or far-red light signaling pathway  (1 genes)  IMP  
GO:0140922 [list] [network] positive regulation of thermomorphogenesis  (3 genes)  IMP  
GO:0009650 [list] [network] UV protection  (13 genes)  IMP  
GO:0042793 [list] [network] plastid transcription  (15 genes)  IMP  
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (55 genes)  IMP  
GO:0010218 [list] [network] response to far red light  (57 genes)  IEP IMP  
GO:1905421 [list] [network] regulation of plant organ morphogenesis  (59 genes)  IMP  
GO:0010114 [list] [network] response to red light  (73 genes)  IEP IMP  
GO:0009637 [list] [network] response to blue light  (94 genes)  IEP  
GO:0009735 [list] [network] response to cytokinin  (124 genes)  IEP  
GO:0009411 [list] [network] response to UV  (141 genes)  IMP  
GO:0045893 [list] [network] positive regulation of DNA-templated transcription  (262 genes)  IMP  
GO:0030163 [list] [network] protein catabolic process  (264 genes)  IMP  
GO:0009266 [list] [network] response to temperature stimulus  (682 genes)  IMP  
GO:0009416 [list] [network] response to light stimulus  (776 genes)  IEP  
GO CC
GO:0000427 [list] [network] plastid-encoded plastid RNA polymerase complex  (12 genes)  IDA  
GO:0042644 [list] [network] chloroplast nucleoid  (48 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0140537 [list] [network] transcription regulator activator activity  (2 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_181011.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  chlo 4  (predict for NP_181011.2)
Subcellular
localization
TargetP
chlo 5  (predict for NP_181011.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.hor
for
PTAC12
ath-u.5
for
PTAC12
ath-r.7
for
PTAC12
ath-m.9
for
PTAC12
ath-e.2
for
PTAC12
ath-m.4.bio
for
PTAC12
ath-m.4.lig
for
PTAC12
ath-m.4.str
for
PTAC12
ath-m.4.tis
for
PTAC12
bna-r.1
for
125609351
bna-r.1
for
106447486
bna-r.1
for
106396188
ghi-r.1
for
107960741
ghi-r.1
for
107905983
cit-r.1
for
102620035
gma-u.5
for
100798194
vvi-u.5
for
100251522
ppo-u.5
for
7470815
mtr-u.5
for
11438320
sly-u.5
for
101055518
sot-r.1
for
102587072
nta-r.1
for
107794404
nta-r.1
for
107778483
osa-u.5
for
4325601
zma-u.5
for
100275546
tae-r.2
for
123079300
tae-r.2
for
123070917
tae-r.2
for
123062184
hvu-r.1
for
123444516
sbi-r.1
for
8072126
bdi-r.1
for
100840007


Ortholog ID: 10694
Species ath bna bna bna ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol PTAC12 LOC125609351 LOC106447486 LOC106396188 LOC107960741 LOC107905983 LOC102620035 LOC100798194 LOC100251522 LOC7470815 LOC11438320 LOC101055518 LOC102587072 LOC107794404 LOC107778483 LOC4325601 LOC100275546 LOC123079300 LOC123070917 LOC123062184 LOC123444516 LOC8072126 LOC100840007
Function* plastid transcriptionally active 12 protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic-like protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic Hop-interacting protein THI030 protein PLASTID TRANSCRIPTIONALLY ACTIVE 12 protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic-like plastid transcriptionally active chromosome 12-like protein protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic protein PLASTID TRANSCRIPTIONALLY ACTIVE 12 protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00220 Arginine biosynthesis 2
bna00330 Arginine and proline metabolism 2
bna04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 2
nta04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 2
nta04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae02010 ABC transporters 2
tae04981 Folate transport and metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818029 125609351 106447486 106396188 107960741 107905983 102620035 100798194 100251522 7470815 11438320 101055518 102587072 107794404 107778483 4325601 100275546 123079300 123070917 123062184 123444516 8072126 100840007
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