ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.4.hor	AT2G38450	Sel1 repeat protein
ath-u.5	AT2G38450	Sel1 repeat protein
ath-r.7	AT2G38450	Sel1 repeat protein
ath-m.9	AT2G38450	Sel1 repeat protein
ath-e.2	AT2G38450	Sel1 repeat protein
ath-m.4.bio	AT2G38450	Sel1 repeat protein
ath-m.4.lig	AT2G38450	Sel1 repeat protein
ath-m.4.str	AT2G38450	Sel1 repeat protein
ath-m.4.tis	AT2G38450	Sel1 repeat protein
ath-u.5	AT5G05360	uncharacterized protein
bra-r.6	103857784	uncharacterized LOC103857784
bra-r.6	103846889	uncharacterized LOC103846889
bna-r.1	106419023	uncharacterized LOC106419023
bna-r.1	106443610	uncharacterized LOC106443610
bna-r.1	106409073	uncharacterized LOC106409073
ghi-r.1	107948974	uncharacterized LOC107948974
ghi-r.1	107900539	uncharacterized LOC107900539
cit-r.1	102610400	hypothetical protein
cit-r.1	102630879	uncharacterized LOC102630879
gma-u.5	100811436	uncharacterized LOC100811436
gma-u.5	100794599	uncharacterized LOC100794599
gma-u.5	100779520	uncharacterized LOC100779520
vvi-u.5	100243041	uncharacterized LOC100243041
vvi-u.5	100253518	uncharacterized LOC100253518
ppo-u.5	7472454	uncharacterized LOC7472454
ppo-u.5	112324458	uncharacterized LOC112324458
ppo-u.5	7474405	uncharacterized LOC7474405
mtr-u.5	11407562	uncharacterized LOC11407562
mtr-u.5	120577900	uncharacterized LOC120577900
mtr-u.5	11415898	uncharacterized LOC11415898
sly-u.5	101265648	uncharacterized LOC101265648
sot-r.1	102603532	uncharacterized LOC102603532
nta-r.1	107764375	uncharacterized LOC107764375
nta-r.1	107815926	uncharacterized LOC107815926
nta-r.1	107831393	uncharacterized LOC107831393
osa-u.5	4332555	uncharacterized LOC4332555
osa-u.5	4338473	uncharacterized LOC4338473
zma-u.5	100277064	uncharacterized LOC100277064
zma-u.5	100274749	uncharacterized LOC100274749
zma-u.5	100276657	uncharacterized LOC100276657
tae-r.2	123085621	uncharacterized LOC123085621
tae-r.2	123097731	uncharacterized LOC123097731
tae-r.2	123092405	uncharacterized LOC123092405
hvu-r.1	123448869	uncharacterized LOC123448869
sbi-r.1	8066776	uncharacterized LOC8066776
sbi-r.1	8084020	uncharacterized LOC8084020
bdi-r.1	100845835	uncharacterized LOC100845835
cre-r.1	CHLRE_12g536500v5	uncharacterized protein

Top 50 coexpressed genes to AT2G38450 (ath-m.4.hor coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT2G38450 (ath-m.4.hor coexpression data)

CoexMap"818426"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

Protein

NP_001324615.1 [sequence] [blastp]
NP_565889.2 [sequence] [blastp]

Subcellular
localization
wolf

chlo 7, mito 1, plas 1, extr 1, vacu 1, mito_plas 1	(predict for NP_001324615.1)
cyto 3, mito 3, chlo 1, nucl 1, vacu 1, cyto_mito 1, cyto_pero 1, mito_plas 1, cyto_E.R. 1, cyto_plas 1	(predict for NP_565889.2)

Subcellular
localization
TargetP

chlo 7	(predict for NP_001324615.1)
chlo 7	(predict for NP_565889.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.hor for AT2G38450	ath-u.5 for AT2G38450	ath-r.7 for AT2G38450	ath-m.9 for AT2G38450	ath-e.2 for AT2G38450	ath-m.4.bio for AT2G38450	ath-m.4.lig for AT2G38450	ath-m.4.str for AT2G38450	ath-m.4.tis for AT2G38450	ath-u.5 for AT5G05360	bra-r.6 for 103857784	bra-r.6 for 103846889	bna-r.1 for 106419023	bna-r.1 for 106443610	bna-r.1 for 106409073	ghi-r.1 for 107948974	ghi-r.1 for 107900539	cit-r.1 for 102610400	cit-r.1 for 102630879	gma-u.5 for 100811436	gma-u.5 for 100794599	gma-u.5 for 100779520	vvi-u.5 for 100243041	vvi-u.5 for 100253518	ppo-u.5 for 7472454	ppo-u.5 for 112324458	ppo-u.5 for 7474405	mtr-u.5 for 11407562	mtr-u.5 for 120577900	mtr-u.5 for 11415898	sly-u.5 for 101265648	sot-r.1 for 102603532	nta-r.1 for 107764375	nta-r.1 for 107815926	nta-r.1 for 107831393	osa-u.5 for 4332555	osa-u.5 for 4338473	zma-u.5 for 100277064	zma-u.5 for 100274749	zma-u.5 for 100276657	tae-r.2 for 123085621	tae-r.2 for 123097731	tae-r.2 for 123092405	hvu-r.1 for 123448869	sbi-r.1 for 8066776	sbi-r.1 for 8084020	bdi-r.1 for 100845835	cre-r.1 for CHLRE_12g536500v5

Ortholog

Ortholog ID: 3783

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

Sel1 repeat protein

uncharacterized protein

uncharacterized LOC103857784

uncharacterized LOC103846889

uncharacterized LOC106419023

uncharacterized LOC106443610

uncharacterized LOC106409073

uncharacterized LOC107900539

uncharacterized LOC121218567

hypothetical protein

uncharacterized LOC102630879

uncharacterized LOC100811436

uncharacterized LOC100779520

uncharacterized LOC100527831

uncharacterized LOC100243041

uncharacterized LOC100253518

uncharacterized LOC7472454

uncharacterized LOC112324458

uncharacterized LOC7474405

uncharacterized LOC11407562

uncharacterized LOC120577900

uncharacterized LOC11415898

uncharacterized LOC101265648

uncharacterized LOC102603532

uncharacterized LOC107764375

uncharacterized LOC107831393

uncharacterized LOC142179248

uncharacterized LOC4332555

uncharacterized LOC4338473

uncharacterized LOC100277064

uncharacterized LOC100274749

uncharacterized LOC100276657

uncharacterized LOC123085621

uncharacterized LOC123097731

uncharacterized LOC123092405

uncharacterized LOC123448869

uncharacterized LOC8066776

uncharacterized LOC8084020

uncharacterized LOC100845835

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	4
ath03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03060	Protein export	2
bra04141	Protein processing in endoplasmic reticulum	2
bra04145	Phagosome	2
bra00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	5
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04142	Lysosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04142	Lysosome	4
ghi04016	MAPK signaling pathway - plant	4
ghi04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03250	Viral life cycle - HIV-1	2
gma00730	Thiamine metabolism	2
gma01240	Biosynthesis of cofactors	2
gma04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03020	RNA polymerase	3
gma04626	Plant-pathogen interaction	2
gma03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04141	Protein processing in endoplasmic reticulum	3
vvi04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	3
mtr03018	RNA degradation	2
mtr03040	Spliceosome	2
mtr04120	Ubiquitin mediated proteolysis	2
mtr04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	5
mtr03040	Spliceosome	3
mtr03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04141	Protein processing in endoplasmic reticulum	2
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	3
sot04141	Protein processing in endoplasmic reticulum	2
sot03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00240	Pyrimidine metabolism	3
nta01232	Nucleotide metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	3
zma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04122	Sulfur relay system	4
tae00790	Folate biosynthesis	3
tae01240	Biosynthesis of cofactors	3
tae03022	Basal transcription factors	3
tae03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03022	Basal transcription factors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03022	Basal transcription factors	3
tae03050	Proteasome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00500	Starch and sucrose metabolism	4
cre01200	Carbon metabolism	3
cre00020	Citrate cycle (TCA cycle)	2
cre01210	2-Oxocarboxylic acid metabolism	2
cre01230	Biosynthesis of amino acids	2

Expression

Expression pattern

Entrez Gene ID^*

818426

830418

103857784

103846889

106419023

106443610

106409073

107900539

121218567

102610400

102630879

100811436

100779520

100527831

100243041

100253518

7472454

112324458

7474405

11407562

120577900

11415898

101265648

102603532

107764375

107831393

142179248

4332555

4338473

100277064

100274749

100276657

123085621

123097731

123092405

123448869

8066776

8084020

100845835

5718482

The preparation time of this page was 0.1 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	10	2	3	2	2	3	2	3	3	1	1	3	2	3	3	1	2	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT2G38450 (ath-m.4.hor coexpression data)

Top 50 enrichment test to AT2G38450 (ath-m.4.hor coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**