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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.hor   AT3G06950   Pseudouridine synthase family protein 
 ath-u.5   AT3G06950   Pseudouridine synthase family protein 
 ath-r.7   AT3G06950   Pseudouridine synthase family protein 
 ath-m.9   AT3G06950   Pseudouridine synthase family protein 
 ath-e.2   AT3G06950   Pseudouridine synthase family protein 
 ath-m.4.bio   AT3G06950   Pseudouridine synthase family protein 
 ath-m.4.lig   AT3G06950   Pseudouridine synthase family protein 
 ath-m.4.str   AT3G06950   Pseudouridine synthase family protein 
 ath-m.4.tis   AT3G06950   Pseudouridine synthase family protein 
 bra-r.6   103859192   tRNA pseudouridine synthase A 1 
 ghi-r.1   107951548   tRNA pseudouridine synthase A 1 
 cit-r.1   102611421   uncharacterized LOC102611421 
 gma-u.5   100801367   tRNA pseudouridine synthase A 1 
 gma-u.5   100775575   tRNA pseudouridine synthase A 1 
 vvi-u.5   100254503   uncharacterized LOC100254503 
 ppo-u.5   7481646   uncharacterized LOC7481646 
 mtr-u.5   11419568   tRNA pseudouridine synthase A 1 
 sly-u.5   101244488   uncharacterized LOC101244488 
 sot-r.1   102600948   tRNA pseudouridine synthase A 1 
 nta-r.1   107780745   uncharacterized LOC107780745 
 nta-r.1   107827274   uncharacterized LOC107827274 
 osa-u.5   9267107   uncharacterized LOC9267107 
 zma-u.5   100217116   pseudouridylate synthase 
 tae-r.2   123180737   tRNA pseudouridine synthase A 1 
 tae-r.2   123043153   tRNA pseudouridine synthase A 1 
 hvu-r.1   123428147   tRNA pseudouridine synthase A 1 
 sbi-r.1   8070563   tRNA pseudouridine synthase A 1 
 bdi-r.1   100831265   tRNA pseudouridine synthase A 1 
 cre-r.1   CHLRE_13g591501v5   uncharacterized protein 

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Top 50 coexpressed genes to AT3G06950 (ath-m.4.hor coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G06950 (ath-m.4.hor coexpression data)

CoexMap"819880"


athAT3G06950 | Entrez gene ID : 819880      
Species ath bra ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre bna
Paralog 9 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0001522 [list] [network] pseudouridine synthesis  (9 genes)  IEA  
GO:0009451 [list] [network] RNA modification  (230 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO MF
GO:0160147 [list] [network] tRNA pseudouridine(38-40) synthase activity  (2 genes)  IEA  
GO:0009982 [list] [network] pseudouridine synthase activity  (18 genes)  IEA TAS  
GO:0003723 [list] [network] RNA binding  (1764 genes)  IEA  
Protein NP_187351.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  chlo_mito 5  (predict for NP_187351.2)
Subcellular
localization
TargetP
chlo 7,  other 4  (predict for NP_187351.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.hor
for
AT3G06950
ath-u.5
for
AT3G06950
ath-r.7
for
AT3G06950
ath-m.9
for
AT3G06950
ath-e.2
for
AT3G06950
ath-m.4.bio
for
AT3G06950
ath-m.4.lig
for
AT3G06950
ath-m.4.str
for
AT3G06950
ath-m.4.tis
for
AT3G06950
bra-r.6
for
103859192
ghi-r.1
for
107951548
cit-r.1
for
102611421
gma-u.5
for
100801367
gma-u.5
for
100775575
vvi-u.5
for
100254503
ppo-u.5
for
7481646
mtr-u.5
for
11419568
sly-u.5
for
101244488
sot-r.1
for
102600948
nta-r.1
for
107780745
nta-r.1
for
107827274
osa-u.5
for
9267107
zma-u.5
for
100217116
tae-r.2
for
123180737
tae-r.2
for
123043153
hvu-r.1
for
123428147
sbi-r.1
for
8070563
bdi-r.1
for
100831265
cre-r.1
for
CHLRE_13g591501v5


Ortholog ID: 10737
Species ath bra ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae hvu sbi bdi cre
Symbol AT3G06950 LOC103859192 LOC107951548 LOC102611421 LOC100801367 LOC100775575 LOC100254503 LOC7481646 LOC11419568 LOC101244488 LOC102600948 LOC107780745 LOC107827274 LOC9267107 LOC100217116 LOC123180737 LOC123043153 LOC123428147 LOC8070563 LOC100831265 CHLRE_13g591501v5
Function* Pseudouridine synthase family protein tRNA pseudouridine synthase A 1 tRNA pseudouridine synthase A 1 uncharacterized LOC102611421 tRNA pseudouridine synthase A 1 tRNA pseudouridine synthase A 1 uncharacterized LOC100254503 uncharacterized LOC7481646 tRNA pseudouridine synthase A 1 uncharacterized LOC101244488 tRNA pseudouridine synthase A 1 uncharacterized LOC107780745 uncharacterized LOC107827274 uncharacterized LOC9267107 pseudouridylate synthase tRNA pseudouridine synthase A 1 tRNA pseudouridine synthase A 1 tRNA pseudouridine synthase A 1 tRNA pseudouridine synthase A 1 tRNA pseudouridine synthase A 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00561 Glycerolipid metabolism 2
gma00566 Sulfoquinovose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00564 Glycerophospholipid metabolism 2
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 3
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00960 Tropane, piperidine and pyridine alkaloid biosynthesis 2
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 2
osa04626 Plant-pathogen interaction 2
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae04141 Protein processing in endoplasmic reticulum 3
tae04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae04141 Protein processing in endoplasmic reticulum 3
tae04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819880 103859192 107951548 102611421 100801367 100775575 100254503 7481646 11419568 101244488 102600948 107780745 107827274 9267107 100217116 123180737 123043153 123428147 8070563 100831265 5718650
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