ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.4.hor	AT3G21570	proline-rich nuclear receptor coactivator
ath-u.5	AT3G21570	proline-rich nuclear receptor coactivator
ath-r.7	AT3G21570	proline-rich nuclear receptor coactivator
ath-m.9	AT3G21570	proline-rich nuclear receptor coactivator
ath-e.2	AT3G21570	proline-rich nuclear receptor coactivator
ath-m.4.bio	AT3G21570	proline-rich nuclear receptor coactivator
ath-m.4.lig	AT3G21570	proline-rich nuclear receptor coactivator
ath-m.4.str	AT3G21570	proline-rich nuclear receptor coactivator
ath-m.4.tis	AT3G21570	proline-rich nuclear receptor coactivator
ath-u.5	AT2G25250	serine/arginine repetitive matrix-like protein
ath-u.5	AT4G32020	serine/arginine repetitive matrix-like protein
bra-r.6	103842199	uncharacterized LOC103842199
bra-r.6	103862105	proline-rich protein 36
bna-r.1	125609241	serine/arginine repetitive matrix protein 1-like
bna-r.1	106411682	serine/arginine repetitive matrix protein 1
bna-r.1	106410924	uncharacterized LOC106410924
ghi-r.1	107895439	uncharacterized LOC107895439
ghi-r.1	107891878	uncharacterized LOC107891878
cit-r.1	102616696	hypothetical protein
cit-r.1	102626438	hypothetical protein
cit-r.1	107175849	uncharacterized LOC107175849
gma-u.5	100306311	uncharacterized LOC100306311
gma-u.5	100789033	uncharacterized LOC100789033
gma-u.5	100526988	uncharacterized LOC100526988
vvi-u.5	104880696	uncharacterized LOC104880696
vvi-u.5	100257948	uncharacterized LOC100257948
ppo-u.5	7473267	uncharacterized LOC7473267
ppo-u.5	7475939	uncharacterized LOC7475939
ppo-u.5	7458402	uncharacterized LOC7458402
mtr-u.5	25493971	uncharacterized LOC25493971
mtr-u.5	25488396	uncharacterized LOC25488396
mtr-u.5	11440849	uncharacterized LOC11440849
sly-u.5	101261347	uncharacterized LOC101261347
sly-u.5	101268511	uncharacterized LOC101268511
sly-u.5	109120477	uncharacterized LOC109120477
sot-r.1	102585406	uncharacterized LOC102585406
sot-r.1	107062410	uncharacterized LOC107062410
sot-r.1	107060270	uncharacterized LOC107060270
nta-r.1	107815772	uncharacterized LOC107815772
nta-r.1	107780720	uncharacterized LOC107780720
osa-u.5	9271223	uncharacterized LOC9271223
osa-u.5	4325431	uncharacterized LOC4325431
zma-u.5	100285353	uncharacterized LOC100285353
zma-u.5	118472257	uncharacterized LOC118472257
tae-r.2	123112383	uncharacterized LOC123112383
tae-r.2	123107242	adenomatous polyposis coli protein 2
tae-r.2	123092798	uncharacterized LOC123092798
hvu-r.1	123395906	uncharacterized LOC123395906
sbi-r.1	8080147	uncharacterized LOC8080147
bdi-r.1	100836891	uncharacterized LOC100836891

Top 50 coexpressed genes to AT3G21570 (ath-m.4.hor coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT3G21570 (ath-m.4.hor coexpression data)

CoexMap"821711"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

Protein

NP_188794.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9

(predict for NP_188794.1)

Subcellular
localization
TargetP

chlo 5, other 5

(predict for NP_188794.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.hor for AT3G21570	ath-u.5 for AT3G21570	ath-r.7 for AT3G21570	ath-m.9 for AT3G21570	ath-e.2 for AT3G21570	ath-m.4.bio for AT3G21570	ath-m.4.lig for AT3G21570	ath-m.4.str for AT3G21570	ath-m.4.tis for AT3G21570	ath-u.5 for AT2G25250	ath-u.5 for AT4G32020	bra-r.6 for 103842199	bra-r.6 for 103862105	bna-r.1 for 125609241	bna-r.1 for 106411682	bna-r.1 for 106410924	ghi-r.1 for 107895439	ghi-r.1 for 107891878	cit-r.1 for 102616696	cit-r.1 for 102626438	cit-r.1 for 107175849	gma-u.5 for 100306311	gma-u.5 for 100789033	gma-u.5 for 100526988	vvi-u.5 for 104880696	vvi-u.5 for 100257948	ppo-u.5 for 7473267	ppo-u.5 for 7475939	ppo-u.5 for 7458402	mtr-u.5 for 25493971	mtr-u.5 for 25488396	mtr-u.5 for 11440849	sly-u.5 for 101261347	sly-u.5 for 101268511	sly-u.5 for 109120477	sot-r.1 for 102585406	sot-r.1 for 107062410	sot-r.1 for 107060270	nta-r.1 for 107815772	nta-r.1 for 107780720	osa-u.5 for 9271223	osa-u.5 for 4325431	zma-u.5 for 100285353	zma-u.5 for 118472257	tae-r.2 for 123112383	tae-r.2 for 123107242	tae-r.2 for 123092798	hvu-r.1 for 123395906	sbi-r.1 for 8080147	bdi-r.1 for 100836891

Ortholog

Ortholog ID: 1336

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

serine/arginine repetitive matrix-like protein

proline-rich protein 36

uncharacterized LOC103851358

serine/arginine repetitive matrix protein 1-like

uncharacterized LOC107897650

uncharacterized LOC107962917

uncharacterized LOC107888913

hypothetical protein

uncharacterized LOC107175849

uncharacterized LOC100789033

uncharacterized LOC100818988

uncharacterized LOC102666496

uncharacterized LOC104880696

uncharacterized LOC100257948

uncharacterized LOC7473267

uncharacterized LOC7458402

uncharacterized LOC7468668

uncharacterized LOC25488396

uncharacterized LOC11440849

uncharacterized LOC11422339

uncharacterized LOC101261347

uncharacterized LOC101268511

uncharacterized LOC109120477

uncharacterized LOC102585406

uncharacterized LOC107060270

RNA-binding protein 25-like

uncharacterized LOC107815772

uncharacterized LOC107780720

uncharacterized LOC9271223

uncharacterized LOC4325431

uncharacterized LOC100285353

uncharacterized LOC118472257

uncharacterized LOC123092798

uncharacterized LOC123181978

uncharacterized LOC123116388

uncharacterized LOC123395906

uncharacterized LOC8080147

uncharacterized LOC100836891

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00053	Ascorbate and aldarate metabolism	2
bra00520	Amino sugar and nucleotide sugar metabolism	2
bra01240	Biosynthesis of cofactors	2
bra01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04136	Autophagy - other	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	3
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00500	Starch and sucrose metabolism	3
vvi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	6
ppo04016	MAPK signaling pathway - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	3
mtr03420	Nucleotide excision repair	2
mtr03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta01240	Biosynthesis of cofactors	8
nta00260	Glycine, serine and threonine metabolism	5
nta00280	Valine, leucine and isoleucine degradation	5
nta00010	Glycolysis / Gluconeogenesis	4
nta00020	Citrate cycle (TCA cycle)	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04146	Peroxisome	2

Expression

Expression pattern

Entrez Gene ID^*

817063

829333

103862105

103851358

125609241

107897650

107962917

107888913

102616696

102626438

107175849

100789033

100818988

102666496

104880696

100257948

7473267

7458402

7468668

25488396

11440849

11422339

101261347

101268511

109120477

102585406

107060270

107058537

107815772

107780720

9271223

4325431

100285353

118472257

123092798

123181978

123116388

123395906

8080147

100836891

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Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	11	2	3	2	3	3	2	3	3	3	3	2	2	2	3	1	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT3G21570 (ath-m.4.hor coexpression data)

Top 50 enrichment test to AT3G21570 (ath-m.4.hor coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**