Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.hor   AT3G25940   TFIIB zinc-binding protein 
 ath-u.5   AT3G25940   TFIIB zinc-binding protein 
 ath-r.7   AT3G25940   TFIIB zinc-binding protein 
 ath-m.9   AT3G25940   TFIIB zinc-binding protein 
 ath-e.2   AT3G25940   TFIIB zinc-binding protein 
 ath-m.4.bio   AT3G25940   TFIIB zinc-binding protein 
 ath-m.4.lig   AT3G25940   TFIIB zinc-binding protein 
 ath-m.4.str   AT3G25940   TFIIB zinc-binding protein 
 ath-m.4.tis   AT3G25940   TFIIB zinc-binding protein 
 bra-r.6   103872808   DNA-directed RNA polymerase I subunit RPA12 
 bna-r.1   106351499   DNA-directed RNA polymerase I subunit RPA12 
 bna-r.1   106374391   DNA-directed RNA polymerase I subunit RPA12 
 ghi-r.1   107938112   DNA-directed RNA polymerase I subunit RPA12 
 ghi-r.1   107940714   DNA-directed RNA polymerase I subunit RPA12 
 cit-r.1   102611182   uncharacterized LOC102611182 
 vvi-u.5   100853901   DNA-directed RNA polymerase I subunit RPA12 
 ppo-u.5   7481723   uncharacterized LOC7481723 
 mtr-u.5   112420268   DNA-directed RNA polymerase I subunit RPA12 
 mtr-u.5   120577857   DNA-directed RNA polymerase I subunit RPA12 
 mtr-u.5   120577861   DNA-directed RNA polymerase I subunit RPA12 
 sly-u.5   101268675   uncharacterized LOC101268675 
 sot-r.1   102582939   DNA-directed RNA polymerase I subunit RPA12-like 
 nta-r.1   107816681   uncharacterized LOC107816681 
 nta-r.1   107769073   uncharacterized LOC107769073 
 osa-u.5   4333888   uncharacterized LOC4333888 
 tae-r.2   123087107   DNA-directed RNA polymerase I subunit RPA12 
 tae-r.2   123090856   DNA-directed RNA polymerase I subunit RPA12 
 tae-r.2   123095863   DNA-directed RNA polymerase I subunit RPA12 
 hvu-r.1   123447452   DNA-directed RNA polymerase I subunit RPA12-like 
 sbi-r.1   8063391   DNA-directed RNA polymerase I subunit RPA12 
 bdi-r.1   100824554   DNA-directed RNA polymerase I subunit RPA12 
 cre-r.1   CHLRE_01g018000v5   uncharacterized protein 

close


Top 50 coexpressed genes to AT3G25940 (ath-m.4.hor coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to AT3G25940 (ath-m.4.hor coexpression data)

CoexMap"822191"


athAT3G25940 | Entrez gene ID : 822191      
Species ath bra bna ghi cit vvi ppo mtr sly sot nta osa tae hvu sbi bdi cre gma zma
Paralog 9 1 2 2 1 1 1 3 1 1 2 1 3 1 1 1 1 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03020 [list] [network] RNA polymerase (52 genes)
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_566786.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 4,  cyto_nucl 4  (predict for NP_566786.1)
Subcellular
localization
TargetP
other 6,  scret 4  (predict for NP_566786.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.hor
for
AT3G25940
ath-u.5
for
AT3G25940
ath-r.7
for
AT3G25940
ath-m.9
for
AT3G25940
ath-e.2
for
AT3G25940
ath-m.4.bio
for
AT3G25940
ath-m.4.lig
for
AT3G25940
ath-m.4.str
for
AT3G25940
ath-m.4.tis
for
AT3G25940
bra-r.6
for
103872808
bna-r.1
for
106351499
bna-r.1
for
106374391
ghi-r.1
for
107938112
ghi-r.1
for
107940714
cit-r.1
for
102611182
vvi-u.5
for
100853901
ppo-u.5
for
7481723
mtr-u.5
for
112420268
mtr-u.5
for
120577857
mtr-u.5
for
120577861
sly-u.5
for
101268675
sot-r.1
for
102582939
nta-r.1
for
107816681
nta-r.1
for
107769073
osa-u.5
for
4333888
tae-r.2
for
123087107
tae-r.2
for
123090856
tae-r.2
for
123095863
hvu-r.1
for
123447452
sbi-r.1
for
8063391
bdi-r.1
for
100824554
cre-r.1
for
CHLRE_01g018000v5


Ortholog ID: 5762
Species ath bra bna ghi ghi cit gma vvi ppo mtr mtr mtr sly sot nta nta osa tae tae tae hvu sbi bdi cre
Symbol AT3G25940 LOC103872808 LOC106351499 LOC107938112 LOC107940714 LOC102611182 LOC100527489 LOC100853901 LOC7481723 LOC120577857 LOC120577861 LOC11424547 LOC101268675 LOC102582939 LOC107816681 LOC107769073 LOC4333888 LOC123087107 LOC123090856 LOC123095863 LOC123447452 LOC8063391 LOC100824554 CHLRE_01g018000v5
Function* TFIIB zinc-binding protein DNA-directed RNA polymerase I subunit RPA12 DNA-directed RNA polymerase I subunit RPA12 DNA-directed RNA polymerase I subunit RPA12 DNA-directed RNA polymerase I subunit RPA12 uncharacterized LOC102611182 uncharacterized LOC100527489 DNA-directed RNA polymerase I subunit RPA12 uncharacterized LOC7481723 DNA-directed RNA polymerase I subunit RPA12 DNA-directed RNA polymerase I subunit RPA12 DNA-directed RNA polymerase I subunit RPA12 uncharacterized LOC101268675 DNA-directed RNA polymerase I subunit RPA12-like uncharacterized LOC107816681 uncharacterized LOC107769073 uncharacterized LOC4333888 DNA-directed RNA polymerase I subunit RPA12 DNA-directed RNA polymerase I subunit RPA12 DNA-directed RNA polymerase I subunit RPA12 DNA-directed RNA polymerase I subunit RPA12-like DNA-directed RNA polymerase I subunit RPA12 DNA-directed RNA polymerase I subunit RPA12 uncharacterized protein
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03020 RNA polymerase 3
ath03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 8
bra03040 Spliceosome 4
bra03018 RNA degradation 3
bra03013 Nucleocytoplasmic transport 2
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 10
bna03040 Spliceosome 4
bna03020 RNA polymerase 2
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03020 RNA polymerase 3
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 2
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
nta03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 6
osa03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 10
tae03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 8
tae03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
tae03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 8
hvu03018 RNA degradation 4
hvu03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 2
cre03020 RNA polymerase 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 822191 103872808 106351499 107938112 107940714 102611182 100527489 100853901 7481723 120577857 120577861 11424547 101268675 102582939 107816681 107769073 4333888 123087107 123090856 123095863 123447452 8063391 100824554 5715151
The preparation time of this page was 0.2 [sec].