ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.4.hor	RAB1C	RAB GTPase homolog 1C
ath-u.5	RAB1C	RAB GTPase homolog 1C
ath-r.7	RAB1C	RAB GTPase homolog 1C
ath-m.9	RAB1C	RAB GTPase homolog 1C
ath-e.2	RAB1C	RAB GTPase homolog 1C
ath-m.4.bio	RAB1C	RAB GTPase homolog 1C
ath-m.4.lig	RAB1C	RAB GTPase homolog 1C
ath-m.4.str	RAB1C	RAB GTPase homolog 1C
ath-m.4.tis	RAB1C	RAB GTPase homolog 1C
ath-u.5	RA-5	RAS 5
ath-u.5	ATFP8	Ras-related small GTP-binding family protein
ath-u.5	RAB1A	RAB GTPase homolog 1A
bra-r.6	103860920	ras-related protein RABD2b
bra-r.6	103827662	ras-related protein RABD2b
bra-r.6	103834020	ras-related protein RABD2c
bna-r.1	106381423	ras-related protein RABD2c
bna-r.1	111214251	ras-related protein RABD2b-like
bna-r.1	106406928	ras-related protein RABD2b
ghi-r.1	107939711	GTP-binding protein YPTM2
ghi-r.1	107945199	ras-related protein RABD1
cit-r.1	102613041	ras-related protein RABD1
cit-r.1	102628383	GTP-binding protein YPTM2-like
cit-r.1	102624523	ras-related protein RABD2a
gma-u.5	RAB7P	ras-related protein RABD1-like
gma-u.5	100813403	ras-related protein RABD2a
gma-u.5	100818694	GTP-binding protein YPTM2
vvi-u.5	100248422	GTP-binding protein YPTM2
vvi-u.5	100254021	ras-related protein RABD1
vvi-u.5	100245986	GTP-binding protein YPTM2
ppo-u.5	7477801	GTP-binding protein YPTM2
ppo-u.5	7461998	GTP-binding protein YPTM2
ppo-u.5	7453919	GTP-binding protein YPTM2
mtr-u.5	11434813	ras-related protein RABD1
mtr-u.5	11442372	ras-related protein RABD2a
mtr-u.5	25493604	GTP-binding protein YPTM2
sly-u.5	101255135	ras-related protein Rab-1A
sly-u.5	101252882	ras-related protein RABD2a
sly-u.5	Rab1B	small GTP-binding protein
sot-r.1	102584742	ras-related protein RABD1
sot-r.1	102602373	ras-related protein RABD2a
sot-r.1	102594778	ras-related protein RABD2a-like
nta-r.1	107771246	ras-related protein RABD1
nta-r.1	107763402	ras-related protein RABD2a
nta-r.1	107763368	ras-related protein RABD1-like
osa-u.5	4330181	GTP-binding protein YPTM2
osa-u.5	4324675	ras-related protein RIC1-like
zma-u.5	100191848	Ras protein RIC1
zma-u.5	542396	ypt homolog 2
zma-u.5	100502159	uncharacterized LOC100502159
tae-r.2	123179836	ras-related protein RABD1
tae-r.2	123103311	ras-related protein RABD1
hvu-r.1	123442626	GTP-binding protein YPTM2
hvu-r.1	123426463	ras-related protein RABD1-like
hvu-r.1	123426805	GTP-binding protein YPTM1
sbi-r.1	8073972	GTP-binding protein YPTM2
sbi-r.1	8065289	ras-related protein RABD2c
sbi-r.1	8078596	ras-related protein RIC1
bdi-r.1	100841613	GTP-binding protein YPTM2
bdi-r.1	100829353	GTP-binding protein YPTM1
bdi-r.1	100834005	ras-related protein RIC1
cre-r.1	CHLRE_12g560150v5	uncharacterized protein

Top 50 coexpressed genes to RAB1C (ath-m.4.hor coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to RAB1C (ath-m.4.hor coexpression data)

CoexMap"827468"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0009860 [list] [network] pollen tube growth	(151 genes)	IGI
GO:0009555 [list] [network] pollen development	(385 genes)	IMP

GO CC

GO:0000325 [list] [network] plant-type vacuole	(788 genes)	HDA
GO:0009506 [list] [network] plasmodesma	(874 genes)	HDA
GO:0005794 [list] [network] Golgi apparatus	(1198 genes)	HDA IDA
GO:0005829 [list] [network] cytosol	(2593 genes)	HDA
GO:0005886 [list] [network] plasma membrane	(2598 genes)	HDA

GO MF

Protein

NP_193486.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, extr 2, chlo 1

(predict for NP_193486.1)

Subcellular
localization
TargetP

scret 8, other 4

(predict for NP_193486.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.hor for RAB1C	ath-u.5 for RAB1C	ath-r.7 for RAB1C	ath-m.9 for RAB1C	ath-e.2 for RAB1C	ath-m.4.bio for RAB1C	ath-m.4.lig for RAB1C	ath-m.4.str for RAB1C	ath-m.4.tis for RAB1C	ath-u.5 for RA-5	ath-u.5 for ATFP8	ath-u.5 for RAB1A	bra-r.6 for 103860920	bra-r.6 for 103827662	bra-r.6 for 103834020	bna-r.1 for 106381423	bna-r.1 for 111214251	bna-r.1 for 106406928	ghi-r.1 for 107939711	ghi-r.1 for 107945199	cit-r.1 for 102613041	cit-r.1 for 102628383	cit-r.1 for 102624523	gma-u.5 for RAB7P	gma-u.5 for 100813403	gma-u.5 for 100818694	vvi-u.5 for 100248422	vvi-u.5 for 100254021	vvi-u.5 for 100245986	ppo-u.5 for 7477801	ppo-u.5 for 7461998	ppo-u.5 for 7453919	mtr-u.5 for 11434813	mtr-u.5 for 11442372	mtr-u.5 for 25493604	sly-u.5 for 101255135	sly-u.5 for 101252882	sly-u.5 for Rab1B	sot-r.1 for 102584742	sot-r.1 for 102602373	sot-r.1 for 102594778	nta-r.1 for 107771246	nta-r.1 for 107763402	nta-r.1 for 107763368	osa-u.5 for 4330181	osa-u.5 for 4324675	zma-u.5 for 100191848	zma-u.5 for 542396	zma-u.5 for 100502159	tae-r.2 for 123179836	tae-r.2 for 123103311	hvu-r.1 for 123442626	hvu-r.1 for 123426463	hvu-r.1 for 123426805	sbi-r.1 for 8073972	sbi-r.1 for 8065289	sbi-r.1 for 8078596	bdi-r.1 for 100841613	bdi-r.1 for 100829353	bdi-r.1 for 100834005	cre-r.1 for CHLRE_12g560150v5

Ortholog

Ortholog ID: 494

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

RAB1C

RA-5

ATFP8

RAB7P

Rab1B

Rab1A

Rab1C

Function^*

RAB GTPase homolog 1C

RAS 5

Ras-related small GTP-binding family protein

ras-related protein RABD2b

ras-related protein RABD2c

ras-related protein RABD2a

ras-related protein RABD2b

ras-related protein RABD1

ras-related protein RABD2b

GTP-binding protein YPTM2

GTP-binding protein YPTM2-like

ras-related protein RABD2a

GTP-binding protein YPTM2

ras-related protein RABD1-like

ras-related protein RABD2a

GTP-binding protein YPTM2

ras-related protein RABD1

GTP-binding protein YPTM2

ras-related protein RABD1

GTP-binding protein YPTM2

ras-related protein RABD2a

small GTP-binding protein

ras-related protein RABD2a

ras-related protein RABD2a-like

GTP-binding protein YPTM2

ras-related protein RABD2a-like

ras-related protein RABD1

ras-related protein RIC1-like

GTP-binding protein YPTM1

Ras protein RIC1

uncharacterized LOC100502159

ypt homolog 1

ras-related protein RABD1

ras-related protein RIC1

GTP-binding protein YPTM2

ras-related protein RABD1-like

GTP-binding protein YPTM2-like

ras-related protein RABD2c

ras-related protein RIC1

GTP-binding protein YPTM2

GTP-binding protein YPTM1

ras-related protein RABD1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00190	Oxidative phosphorylation	5
ath03050	Proteasome	4
ath04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04120	Ubiquitin mediated proteolysis	5
ath04136	Autophagy - other	3
ath04144	Endocytosis	2
ath03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04016	MAPK signaling pathway - plant	4
bra04070	Phosphatidylinositol signaling system	4
bra04075	Plant hormone signal transduction	4
bra04626	Plant-pathogen interaction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	4
bra03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	3
bna00240	Pyrimidine metabolism	2
bna01232	Nucleotide metabolism	2
bna01240	Biosynthesis of cofactors	2
bna04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00240	Pyrimidine metabolism	2
bna01232	Nucleotide metabolism	2
bna01240	Biosynthesis of cofactors	2
bna04141	Protein processing in endoplasmic reticulum	2
bna04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00190	Oxidative phosphorylation	4
ghi04142	Lysosome	4
ghi04145	Phagosome	4
ghi00860	Porphyrin metabolism	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00860	Porphyrin metabolism	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03050	Proteasome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04136	Autophagy - other	3
cit04144	Endocytosis	2
cit04145	Phagosome	2
cit04148	Efferocytosis	2
cit04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04130	SNARE interactions in vesicular transport	2
cit04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	2
gma00510	N-Glycan biosynthesis	2
gma00513	Various types of N-glycan biosynthesis	2
gma04141	Protein processing in endoplasmic reticulum	2
gma03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04144	Endocytosis	4
gma04145	Phagosome	3
gma04148	Efferocytosis	3
gma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00071	Fatty acid degradation	2
gma00280	Valine, leucine and isoleucine degradation	2
gma00592	alpha-Linolenic acid metabolism	2
gma01040	Biosynthesis of unsaturated fatty acids	2
gma01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04144	Endocytosis	4
vvi04145	Phagosome	2
vvi04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	4
ppo00190	Oxidative phosphorylation	4
ppo03083	Polycomb repressive complex	2
ppo04120	Ubiquitin mediated proteolysis	2
ppo04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	5
ppo03083	Polycomb repressive complex	2
ppo04120	Ubiquitin mediated proteolysis	2
ppo04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04144	Endocytosis	3
mtr04141	Protein processing in endoplasmic reticulum	2
mtr04120	Ubiquitin mediated proteolysis	2
mtr03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04141	Protein processing in endoplasmic reticulum	3
mtr04120	Ubiquitin mediated proteolysis	3
mtr03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04626	Plant-pathogen interaction	4
sly04016	MAPK signaling pathway - plant	3
sly04070	Phosphatidylinositol signaling system	3
sly04075	Plant hormone signal transduction	3
sly04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04144	Endocytosis	5
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03050	Proteasome	5
sot00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00190	Oxidative phosphorylation	6
sot04145	Phagosome	5
sot04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00561	Glycerolipid metabolism	2
sot00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00190	Oxidative phosphorylation	6
nta04145	Phagosome	6
nta04142	Lysosome	4
nta04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04130	SNARE interactions in vesicular transport	3
nta04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04144	Endocytosis	4
osa04136	Autophagy - other	4
osa04145	Phagosome	2
osa04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04136	Autophagy - other	4
osa00600	Sphingolipid metabolism	2
osa04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04136	Autophagy - other	7
zma04144	Endocytosis	3
zma04145	Phagosome	2
zma04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00240	Pyrimidine metabolism	2
zma01232	Nucleotide metabolism	2
zma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04136	Autophagy - other	5
tae04144	Endocytosis	4
tae04145	Phagosome	4
tae04148	Efferocytosis	4
tae00600	Sphingolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	2
tae04517	IgSF CAM signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	3
hvu04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	3
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01200	Carbon metabolism	4
sbi00071	Fatty acid degradation	3
sbi00410	beta-Alanine metabolism	3
sbi00592	alpha-Linolenic acid metabolism	3
sbi00640	Propanoate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04136	Autophagy - other	3
sbi04120	Ubiquitin mediated proteolysis	3
sbi04144	Endocytosis	2
sbi04146	Peroxisome	2
sbi00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04144	Endocytosis	6
bdi00100	Steroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04144	Endocytosis	4
bdi01240	Biosynthesis of cofactors	2
bdi04145	Phagosome	2
bdi04148	Efferocytosis	2
bdi04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04144	Endocytosis	5

Expression

Expression pattern

Entrez Gene ID^*

827468

837023

820345

103839540

103855466

103843860

106406928

106349360

106381870

107912205

107922713

102628383

102624523

102609189

100796206

100813403

100818694

100248422

100254021

100245986

7477801

7461998

18111134

11434813

25493604

25500061

544011

544010

544012

102602373

102587256

102596483

107779090

107784791

107813681

4324675

4337556

100191848

100502159

542531

123179836

123061292

123442626

123426463

123442625

8065289

8078596

100841613

100829353

100835716

5728675

The preparation time of this page was 0.2 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	12	3	3	2	3	3	3	3	3	3	3	3	2	3	2	3	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to RAB1C (ath-m.4.hor coexpression data)

Top 50 enrichment test to RAB1C (ath-m.4.hor coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**