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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.hor   EMB1923   embryo defective 1923 
 ath-u.5   EMB1923   embryo defective 1923 
 ath-r.7   EMB1923   embryo defective 1923 
 ath-m.9   EMB1923   embryo defective 1923 
 ath-e.2   EMB1923   embryo defective 1923 
 ath-m.4.bio   EMB1923   embryo defective 1923 
 ath-m.4.lig   EMB1923   embryo defective 1923 
 ath-m.4.str   EMB1923   embryo defective 1923 
 ath-m.4.tis   EMB1923   embryo defective 1923 
 bra-r.6   103861815   uncharacterized LOC103861815 
 bra-r.6   103867909   uncharacterized LOC103867909 
 bna-r.1   111198034   uncharacterized LOC111198034 
 bna-r.1   106364173   uncharacterized LOC106364173 
 bna-r.1   BNAC07G50640D   uncharacterized BNAC07G50640D 
 ghi-r.1   107919396   uncharacterized LOC107919396 
 ghi-r.1   107894127   uncharacterized LOC107894127 
 cit-r.1   102614991   uncharacterized LOC102614991 
 gma-u.5   100794085   uncharacterized LOC100794085 
 gma-u.5   100819518   uncharacterized LOC100819518 
 vvi-u.5   100242621   uncharacterized LOC100242621 
 ppo-u.5   7497399   uncharacterized LOC7497399 
 mtr-u.5   25492072   uncharacterized LOC25492072 
 sly-u.5   101257605   uncharacterized LOC101257605 
 sot-r.1   102592106   uncharacterized LOC102592106 
 nta-r.1   107806872   uncharacterized LOC107806872 
 nta-r.1   107798478   uncharacterized LOC107798478 

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Top 50 coexpressed genes to EMB1923 (ath-m.4.hor coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to EMB1923 (ath-m.4.hor coexpression data)

CoexMap"828936"


athEMB1923 | Entrez gene ID : 828936      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta sbi osa tae hvu zma cre bdi
Paralog 9 2 3 2 1 2 1 1 1 1 1 2 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045037 [list] [network] protein import into chloroplast stroma  (29 genes)  IDA  
GO:0009409 [list] [network] response to cold  (436 genes)  IMP  
GO:0009793 [list] [network] embryo development ending in seed dormancy  (569 genes)  NAS  
GO CC
GO:0062091 [list] [network] Ycf2/FtsHi complex  (10 genes)  IPI  
GO:0005886 [list] [network] plasma membrane  (2598 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO MF
Protein NP_567800.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for NP_567800.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_567800.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.hor
for
EMB1923
ath-u.5
for
EMB1923
ath-r.7
for
EMB1923
ath-m.9
for
EMB1923
ath-e.2
for
EMB1923
ath-m.4.bio
for
EMB1923
ath-m.4.lig
for
EMB1923
ath-m.4.str
for
EMB1923
ath-m.4.tis
for
EMB1923
bra-r.6
for
103861815
bra-r.6
for
103867909
bna-r.1
for
111198034
bna-r.1
for
106364173
bna-r.1
for
BNAC07G50640D
ghi-r.1
for
107919396
ghi-r.1
for
107894127
cit-r.1
for
102614991
gma-u.5
for
100794085
gma-u.5
for
100819518
vvi-u.5
for
100242621
ppo-u.5
for
7497399
mtr-u.5
for
25492072
sly-u.5
for
101257605
sot-r.1
for
102592106
nta-r.1
for
107806872
nta-r.1
for
107798478


Ortholog ID: 12671
Species ath bra bra bna bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta
Symbol EMB1923 LOC103861815 LOC103867909 LOC111198034 LOC106364173 BNAC07G50640D LOC107919396 LOC107894127 LOC102614991 LOC100794085 LOC100819518 LOC100242621 LOC7497399 LOC25492072 LOC101257605 LOC102592106 LOC107806872 LOC107798478
Function* embryo defective 1923 uncharacterized LOC103861815 uncharacterized LOC103867909 uncharacterized LOC111198034 uncharacterized LOC106364173 uncharacterized BNAC07G50640D uncharacterized LOC107919396 uncharacterized LOC107894127 uncharacterized LOC102614991 uncharacterized LOC100794085 uncharacterized LOC100819518 uncharacterized LOC100242621 uncharacterized LOC7497399 uncharacterized LOC25492072 uncharacterized LOC101257605 uncharacterized LOC102592106 uncharacterized LOC107806872 uncharacterized LOC107798478
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 4
bna00561 Glycerolipid metabolism 2
bna00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 4
bna00561 Glycerolipid metabolism 2
bna00564 Glycerophospholipid metabolism 2
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 4
bna00561 Glycerolipid metabolism 2
bna00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01230 Biosynthesis of amino acids 3
ghi00240 Pyrimidine metabolism 2
ghi01232 Nucleotide metabolism 2
ghi00220 Arginine biosynthesis 2
ghi00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01230 Biosynthesis of amino acids 3
ghi00240 Pyrimidine metabolism 2
ghi01232 Nucleotide metabolism 2
ghi00220 Arginine biosynthesis 2
ghi00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01230 Biosynthesis of amino acids 4
cit01210 2-Oxocarboxylic acid metabolism 3
cit00270 Cysteine and methionine metabolism 3
cit03010 Ribosome 3
cit00290 Valine, leucine and isoleucine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828936 103861815 103867909 111198034 106364173 106410152 107919396 107894127 102614991 100794085 100819518 100242621 7497399 25492072 101257605 102592106 107806872 107798478
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