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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.hor   ATH1   homeobox protein ATH1 
 ath-u.5   ATH1   homeobox protein ATH1 
 ath-r.7   ATH1   homeobox protein ATH1 
 ath-m.9   ATH1   homeobox protein ATH1 
 ath-e.2   ATH1   homeobox protein ATH1 
 ath-m.4.bio   ATH1   homeobox protein ATH1 
 ath-m.4.lig   ATH1   homeobox protein ATH1 
 ath-m.4.str   ATH1   homeobox protein ATH1 
 ath-m.4.tis   ATH1   homeobox protein ATH1 
 bra-r.6   103862209   homeobox protein ATH1 
 bna-r.1   106372798   homeobox protein ATH1-like 
 ghi-r.1   107953882   homeobox protein ATH1 
 ghi-r.1   107929856   homeobox protein ATH1 
 cit-r.1   102607441   homeobox protein ATH1 
 gma-u.5   100820354   homeobox protein ATH1 
 gma-u.5   100812648   homeobox protein ATH1 
 gma-u.5   100806862   homeobox protein ATH1 
 vvi-u.5   100249241   homeobox protein ATH1 
 ppo-u.5   7463745   homeobox protein ATH1 
 sly-u.5   543694   homeobox protein ATH1 
 sot-r.1   102600209   homeobox protein ATH1 
 nta-r.1   107806635   homeobox protein ATH1 
 nta-r.1   107823800   homeobox protein ATH1 
 osa-u.5   4328784   homeobox protein ATH1 
 osa-u.5   4341309   BEL1-like homeodomain protein 1 
 zma-u.5   100273707   uncharacterized LOC100273707 
 zma-u.5   100274028   uncharacterized LOC100274028 
 tae-r.2   123160663   BEL1-like homeodomain protein 2 
 tae-r.2   100682415   BEL1-like homeodomain protein 2 
 hvu-r.1   123412142   BEL1-like homeodomain protein 2 
 sbi-r.1   8076725   homeobox protein ATH1 
 sbi-r.1   8073792   homeobox protein ATH1 
 bdi-r.1   100833334   BEL1-like homeodomain protein 2 
 bdi-r.1   100822753   homeobox protein ATH1 

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Top 50 coexpressed genes to ATH1 (ath-m.4.hor coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to ATH1 (ath-m.4.hor coexpression data)

CoexMap"829435"


athATH1 | Entrez gene ID : 829435      
Species ath bra bna ghi cit gma vvi ppo sly sot nta osa zma tae hvu sbi bdi cre mtr
Paralog 9 1 1 2 1 3 1 1 1 1 2 2 2 2 1 2 2 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0090470 [list] [network] shoot organ boundary specification  (1 genes)  IMP  
GO:0010371 [list] [network] regulation of gibberellin biosynthetic process  (10 genes)  IMP  
GO:0010227 [list] [network] floral organ abscission  (26 genes)  IMP  
GO:0008285 [list] [network] negative regulation of cell population proliferation  (42 genes)  IMP  
GO:0009640 [list] [network] photomorphogenesis  (77 genes)  IDA  
GO:0010228 [list] [network] vegetative to reproductive phase transition of meristem  (186 genes)  IMP  
GO:0010073 [list] [network] meristem maintenance  (197 genes)  IGI  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0043565 [list] [network] sequence-specific DNA binding  (875 genes)  IDA  
GO:0003677 [list] [network] DNA binding  (1274 genes)  ISS  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001328067.1 [sequence] [blastp]
NP_195024.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  chlo 1,  vacu 1  (predict for NP_001328067.1)
nucl 9,  chlo 1,  vacu 1  (predict for NP_195024.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001328067.1)
other 8  (predict for NP_195024.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.hor
for
ATH1
ath-u.5
for
ATH1
ath-r.7
for
ATH1
ath-m.9
for
ATH1
ath-e.2
for
ATH1
ath-m.4.bio
for
ATH1
ath-m.4.lig
for
ATH1
ath-m.4.str
for
ATH1
ath-m.4.tis
for
ATH1
bra-r.6
for
103862209
bna-r.1
for
106372798
ghi-r.1
for
107953882
ghi-r.1
for
107929856
cit-r.1
for
102607441
gma-u.5
for
100820354
gma-u.5
for
100812648
gma-u.5
for
100806862
vvi-u.5
for
100249241
ppo-u.5
for
7463745
sly-u.5
for
543694
sot-r.1
for
102600209
nta-r.1
for
107806635
nta-r.1
for
107823800
osa-u.5
for
4328784
osa-u.5
for
4341309
zma-u.5
for
100273707
zma-u.5
for
100274028
tae-r.2
for
123160663
tae-r.2
for
100682415
hvu-r.1
for
123412142
sbi-r.1
for
8076725
sbi-r.1
for
8073792
bdi-r.1
for
100833334
bdi-r.1
for
100822753


Ortholog ID: 5814
Species ath bra bna ghi ghi cit gma gma gma vvi ppo sly sot nta nta osa osa zma zma tae tae tae hvu sbi sbi bdi bdi
Symbol ATH1 LOC103862209 LOC106365211 LOC107953882 LOC107929856 LOC102607441 LOC100820354 LOC100812648 LOC100806862 LOC100249241 LOC7463745 LOC543694 LOC102600209 LOC107806635 LOC107823800 LOC4328784 LOC4341309 LOC100273707 LOC100274028 LOC123160663 LOC100682415 LOC123166874 LOC123412142 LOC8076725 LOC8073792 LOC100833334 LOC100822753
Function* homeobox protein ATH1 homeobox protein ATH1 homeobox protein ATH1 homeobox protein ATH1 homeobox protein ATH1 homeobox protein ATH1 homeobox protein ATH1 homeobox protein ATH1 homeobox protein ATH1 homeobox protein ATH1 homeobox protein ATH1 homeobox protein ATH1 homeobox protein ATH1 homeobox protein ATH1 homeobox protein ATH1 homeobox protein ATH1 BEL1-like homeodomain protein 1 uncharacterized LOC100273707 uncharacterized LOC100274028 BEL1-like homeodomain protein 2 BEL1-like homeodomain protein 2 BEL1-like homeodomain protein 2 BEL1-like homeodomain protein 2 homeobox protein ATH1 homeobox protein ATH1 BEL1-like homeodomain protein 2 homeobox protein ATH1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00500 Starch and sucrose metabolism 7
ath00960 Tropane, piperidine and pyridine alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00920 Sulfur metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00942 Anthocyanin biosynthesis 3
bna00941 Flavonoid biosynthesis 2
bna00944 Flavone and flavonol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi02010 ABC transporters 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00062 Fatty acid elongation 2
zma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00480 Glutathione metabolism 4
zma00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00940 Phenylpropanoid biosynthesis 3
tae00062 Fatty acid elongation 3
tae04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00062 Fatty acid elongation 3
tae04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00062 Fatty acid elongation 3
tae04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00940 Phenylpropanoid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829435 103862209 106365211 107953882 107929856 102607441 100820354 100812648 100806862 100249241 7463745 543694 102600209 107806635 107823800 4328784 4341309 100273707 100274028 123160663 100682415 123166874 123412142 8076725 8073792 100833334 100822753
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